Annotation Detail for COL1A2
Basic Information Top
| Gene Symbol: | COL1A2 ( OI4 ) |
|---|---|
| Gene Full Name: | collagen, type I, alpha 2 |
| Band: | 7q21.3 |
| Quick Links | Entrez ID:1278; OMIM: 120160; Uniprot ID:CO1A2_HUMAN; ENSEMBL ID: ENSG00000164692; HGNC ID: 2198 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 80 | Pyrrolidone carboxylic acid (By | |
| 84 | Allysine. | |
| 420 | Hydroxyproline. | |
| 441 | Hydroxyproline. | |
| 444 | Hydroxyproline. | |
| 1267 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 80 | Pyrrolidone carboxylic acid (Bysimilarity). | Swiss-Prot 53.0 |
| 84 | Allysine. | Swiss-Prot 53.0 |
| 420 | Hydroxyproline. | Swiss-Prot 53.0 |
| 441 | Hydroxyproline. | Swiss-Prot 53.0 |
| 444 | Hydroxyproline. | Swiss-Prot 53.0 |
| 1267 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
- RefSeq ID: NM_000089
- Location:chr7 93861808-93898479
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 93860839 | 93861289 | 450 | 745 |
| NRSF | Jurkat | GSE13047 | 93861482 | 93861910 | 428 | 113 |
| NRSF | Jurkat | SISSRdata | 93861448 | 93861830 | 382 | 170 |
| NRSF-mono | Jurkat | QuESTdata | 93861459 | 93861855 | 396 | 152 |
| P300 | T30-glioblastoma | GSE21026 | 93840805 | 93844048 | 3243 | 19382 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 93903173 | 93903656 | 483 | 4935 |
| hScc1 | Bcell | GSE12603 | 93903245 | 93903598 | 353 | 4942 |
| hScc1 | Bcell | GSE12603 | 93916489 | 93916892 | 403 | 18211 |
| hScc1 | CdLS | GSE12603 | 93903245 | 93903656 | 411 | 4971 |
| hScc1 | CdLS | GSE12603 | 93916489 | 93916892 | 403 | 18211 |
| hScc1 | G2 | GSE9613 | 93903136 | 93903656 | 520 | 4917 |
| hScc1 | G2 | GSE9613 | 93916432 | 93916892 | 460 | 18183 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 93862807 | 93862947 | 140 | 0 |
| CTCF | CD4 | SISSRdata | 93862807 | 93862947 | 140 | 0 |
| CTCF | G2 | GSE9613 | 93862099 | 93862317 | 218 | 0 |
| CTCF | G2 | GSE9613 | 93862633 | 93863402 | 769 | 0 |
| NRSF-poly | Jurkat | QuESTdata | 93861609 | 93862223 | 614 | 0 |
| STAT1 | HeLa | GSE12782 | 93863326 | 93864519 | 1193 | 0 |
| STAT1 | HeLa | GSE12783 | 93863389 | 93864485 | 1096 | 0 |
| hScc1 | Bcell | GSE12603 | 93862317 | 93863105 | 788 | 0 |
| hScc1 | CdLS | GSE12603 | 93862633 | 93863132 | 499 | 0 |
| hScc1 | G2 | GSE9613 | 93861981 | 93863402 | 1421 | 0 |
| p130 | Quiescent | GSE19898 | 93861473 | 93863289 | 1816 | 0 |
| p130 | shRbQuiescent | GSE19898 | 93862112 | 93862986 | 874 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7g | hsa-let-7g | 3 | 20338660 |
| hsa-let-7g* | hsa-let-7g | 3 | 20338660 |
| hsa-miR-135a | hsa-mir-135a-1 | 3 | 18723672 |
| hsa-miR-135a | hsa-mir-135a-2 | 12 | 18723672 |
| hsa-miR-192 | hsa-mir-192 | 11 | 17360662 |
| hsa-miR-192 | hsa-mir-192 | 11 | 21389977 |
| hsa-miR-192* | hsa-mir-192 | 11 | 17360662 |
| hsa-miR-192* | hsa-mir-192 | 11 | 21389977 |
| hsa-miR-200b | hsa-mir-200b | 1 | 21389977 |
| hsa-miR-200b* | hsa-mir-200b | 1 | 21389977 |
| hsa-miR-200c | hsa-mir-200c | 12 | 21389977 |
| hsa-miR-200c* | hsa-mir-200c | 12 | 21389977 |
| hsa-miR-215 | hsa-mir-215 | 1 | 17360662 |
| hsa-miR-216a | hsa-mir-216a | 2 | 20713358 |
| hsa-miR-29a | hsa-mir-29a | 7 | 18390668 |
| hsa-miR-29a | hsa-mir-29a | 7 | 18723672 |
| hsa-miR-29a* | hsa-mir-29a | 7 | 18390668 |
| hsa-miR-29a* | hsa-mir-29a | 7 | 18723672 |
| hsa-miR-29b | hsa-mir-29b-1 | 7 | 19956414 |
| hsa-miR-29b | hsa-mir-29b-2 | 1 | 19956414 |
| hsa-miR-29b | hsa-mir-29b-1 | 7 | 18723672 |
| hsa-miR-29b | hsa-mir-29b-2 | 1 | 18723672 |
| hsa-miR-29b-1* | hsa-mir-29b-1 | 7 | 19956414 |
| hsa-miR-29c | hsa-mir-29c | 1 | 18390668 |
| hsa-miR-29c* | hsa-mir-29c | 1 | 18390668 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 595 | Unknown | TRUE | miR-29c | COL1A2 | Luciferase assay | 18390668 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000164692 | nasopharyngeal epithelium | nasopharyngeal carcinomas (NPC) | down regulated | muscle cell | "benign tumour, malignant tumour, carcinoma, sarcoma" |
Cis-Nats regulation