Annotation Detail for SPATA17

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Basic Information Top

Gene Symbol:	SPATA17 ( IQCH,MSRG-11,MSRG11,RP11-144C20.1 )
Gene Full Name:	spermatogenesis associated 17
Band:	1q41
Quick Links	Entrez ID:128153; OMIM: 611032; Uniprot ID:SPT17_HUMAN; ENSEMBL ID: ENSG00000162814; HGNC ID: 25184
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:6 results

Location(AA)	Modification
180	Phosphoserine.

Location(AA)	Modification	Resource
180	Phosphoserine(CDC2)	HMM predict
200	Phosphothreonine(PKC)	HMM predict
211	Phosphoserine(IKK)	HMM predict
213	Phosphoserine(CK1)	HMM predict
215	O-linked	HMM predict
255	Phosphotyrosine(EGFR)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_138796
Location:chr1 215871317-216107106
strand:+

Upstream the gene:5 results
Downstream the gene:0 results
Inside the gene:14 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
H3ac	HepG2	E	215870802	215871790	988	22
RARA	MCF7	GSE15244	215870766	215871827	1061	21
TAF	Hela	GSE8489	215870554	215871827	1273	127
USF2	HepG2	E	215870829	215871790	961	8
p130	shRbQuiescent	GSE19898	215870514	215871951	1437	85

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	215952756	215953682	926	0
FoxA1	MCF7	MACSdata	215953146	215953678	532	0
H3K4me3	colorectal	cancer	215871102	215871621	519	0
Nanog	hES	GSE18292	215900876	215901041	165	0
RARA	MCF7	GSE15244	215952756	215953682	926	0
RARA	MCF7	GSE15244	215957661	215959460	1799	0
RARA	MCF7	GSE15244	216048958	216049276	318	0
Sox2	hES	GSE18292	215987134	215987710	576	0
TAF	Hela	GSE8489	216018712	216018877	165	0
TAF	k562	GSE8489	215936616	215936794	178	0
TFAP2C	MCF7	GSE21234	215957939	215958542	603	0
TFAP2C	MCF7	GSE21234	215958772	215959307	535	0
hScc1	CdLS	GSE12603	215900820	215901281	461	0
p63	keratinocytes	GSE17611	215899962	215901059	1097	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
2341	mRNA	LOC128153	chr1	214193089	214428879	126	EST		chr1	214342644	214346857	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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