AutismKB 2.0

Annotation Detail for COL15A1


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Basic Information Top
Gene Symbol:COL15A1 ( FLJ38566 )
Gene Full Name: collagen, type XV, alpha 1
Band: 9q22.33
Quick LinksEntrez ID:1306; OMIM: 120325; Uniprot ID:COFA1_HUMAN; ENSEMBL ID: ENSG00000204291; HGNC ID: 2192
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
306N-linked (GlcNAc...) (Potential).
324N-linked (GlcNAc...) (Potential).
687N-linked (GlcNAc...) (Potential).
807N-linked (GlcNAc...) (Potential).
814N-linked (GlcNAc...) (Potential).
1046N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
306N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
324N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
687N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
807N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
814N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1046N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
27O-linkedHMM predict
29O-linkedHMM predict
37Phosphoserine(ATM)HMM predict
146Phosphoserine(ATM)HMM predict
230Phosphothreonine(CDK)HMM predict
230Phosphothreonine(MAPK)HMM predict
230Phosphothreonine(CDC2)HMM predict
241Phosphoserine(CK1)HMM predict
243O-linkedHMM predict
243Phosphoserine(IKK)HMM predict
243Phosphoserine(CK1)HMM predict
243Phosphoserine(CK2)HMM predict
264Phosphotyrosine(Abl)HMM predict
282Phosphothreonine(CDK)HMM predict
282Phosphothreonine(MAPK)HMM predict
284O-linkedHMM predict
285Phosphoserine(CDC2)HMM predict
324N-linkedHMM predict
332PhosphoserineHMM predict
378O-linkedHMM predict
379O-linkedHMM predict
379Phosphoserine(CK1)HMM predict
382O-linkedHMM predict
391O-linkedHMM predict
399Phosphothreonine(MAPK)HMM predict
421Phosphoserine(MAPK)HMM predict
455O-linkedHMM predict
458O-linkedHMM predict
458Phosphoserine(CK1)HMM predict
466Phosphothreonine(PKC)HMM predict
500Phosphothreonine(PKC)HMM predict
526Phosphoserine(ATM)HMM predict
528Phosphoserine(IKK)HMM predict
528Phosphoserine(ATM)HMM predict
528O-linkedHMM predict
558O-linkedHMM predict
564O-linkedHMM predict
567O-linkedHMM predict
581O-linkedHMM predict
647O-linkedHMM predict
647Phosphoserine(ATM)HMM predict
672O-linkedHMM predict
678O-linkedHMM predict
681O-linkedHMM predict
693O-linkedHMM predict
699MethylarginineHMM predict
707O-linkedHMM predict
708O-linkedHMM predict
745Phosphoserine(CK2)HMM predict
766O-linkedHMM predict
769O-linkedHMM predict
775O-linkedHMM predict
792MethylarginineHMM predict
814N-linkedHMM predict
843O-linkedHMM predict
846O-linkedHMM predict
855O-linkedHMM predict
861O-linkedHMM predict
881O-linkedHMM predict
896O-linkedHMM predict
902O-linkedHMM predict
920O-linkedHMM predict
922O-linkedHMM predict
923O-linkedHMM predict
986O-linkedHMM predict
989O-linkedHMM predict
991O-linkedHMM predict
997O-linkedHMM predict
998O-linkedHMM predict
1001O-linkedHMM predict
1033O-linkedHMM predict
1036O-linkedHMM predict
1039O-linkedHMM predict
1042O-linkedHMM predict
1067O-linkedHMM predict
1188Phosphoserine(ATM)HMM predict
1195O-linkedHMM predict
1213Phosphotyrosine(INSR)HMM predict
1213Phosphotyrosine(Syk)HMM predict
1272Phosphoserine(CK1)HMM predict
1354Phosphoserine(CDC2)HMM predict
1367Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001855
  • Location:chr9 100745958-100872888
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
STAT1 HeLaGSE12783 100736777 100738377 1600 8382
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 100887847 100887901 54 14986
ER Fulvestrant-MCF7GSE14664 100887929 100888022 93 15087
TAF k562GSE8489 100875084 100875640 556 2474
TAF k562GSE8489 100876626 100877057 431 3953
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 100821594 100822526 932 0
CBP T30-glioblastomaGSE21026 100831966 100832866 900 0
CBP T30-glioblastomaGSE21026 100842925 100843873 948 0
CTCF CD4GSE12889 100776962 100777364 402 0
CTCF CD4SISSRdata 100776962 100777364 402 0
ER E2-MCF7GSE14664 100760951 100761011 60 0
ER E2-MCF7GSE14664 100824658 100824734 76 0
ER Fulvestrant-MCF7GSE14664 100760952 100761016 64 0
ER Fulvestrant-MCF7GSE14664 100824689 100824736 47 0
Myc K562GSE19551 100833406 100833838 432 0
NRSF JurkatSISSRdata 100807453 100807586 133 0
Nanog hESGSE18292 100765044 100765284 240 0
Oct1 H2O2-HelaGSE14283 100845546 100845584 38 0
Oct1 HelaGSE14283 100760594 100760629 35 0
Oct1 HelaGSE14283 100761786 100761817 31 0
Oct1 HelaGSE14283 100796439 100796491 52 0
Oct1 HelaGSE14283 100824665 100824737 72 0
Oct1 HelaGSE14283 100829830 100829889 59 0
Oct1 HelaGSE14283 100856640 100856669 29 0
Oct1 HelaGSE14283 100859269 100859312 43 0
Oct4 ESGSE20650 100764967 100765473 506 0
Oct4 hESGSE17917 100765070 100765406 336 0
P300 T30-glioblastomaGSE21026 100785351 100786051 700 0
P300 T30-glioblastomaGSE21026 100791139 100792412 1273 0
P300 T30-glioblastomaGSE21026 100832061 100832801 740 0
P300 T30-glioblastomaGSE21026 100842919 100843870 951 0
RNAII Tamoxifen-MCF7GSE14664 100772961 100773087 126 0
RNAII Tamoxifen-MCF7GSE14664 100845541 100845587 46 0
Rb QuiescentGSE19898 100764415 100764551 136 0
TAF HelaGSE8489 100848925 100849142 217 0
TFAP2C MCF7GSE21234 100812526 100812904 378 0
hScc1 BcellGSE12603 100745947 100746745 798 0
hScc1 BcellGSE12603 100776931 100777674 743 0
hScc1 BcellGSE12603 100802786 100803184 398 0
hScc1 CdLSGSE12603 100800762 100801579 817 0
hScc1 CdLSGSE12603 100802786 100803184 398 0
p130 QuiescentGSE19898 100760334 100760699 365 0
p130 QuiescentGSE19898 100760745 100760916 171 0
p130 SenescentGSE19898 100832081 100832210 129 0
p130 SenescentGSE19898 100860017 100860398 381 0
p130 shRbQuiescentGSE19898 100766682 100767119 437 0
p130 shRbQuiescentGSE19898 100832603 100833325 722 0
p130 shRbSenescentGSE19898 100791762 100792117 355 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-29a hsa-mir-29a 7 18390668
hsa-miR-29a* hsa-mir-29a 7 18390668
hsa-miR-29c hsa-mir-29c 1 18390668
hsa-miR-29c* hsa-mir-29c 1 18390668
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
596 Unknown TRUE miR-29c COL15A1 Luciferase assay 18390668
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000204291 nasopharyngeal epithelium nasopharyngeal carcinomas (NPC) down regulated n_a n_a
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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