AutismKB 2.0

Annotation Detail for CPNE4


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Basic Information Top
Gene Symbol:CPNE4 ( COPN4,CPN4,MGC15604 )
Gene Full Name: copine IV
Band: 3q22.1
Quick LinksEntrez ID:131034; OMIM: 604208; Uniprot ID:CPNE4_HUMAN; ENSEMBL ID: ENSG00000196353; HGNC ID: 2317
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
8Phosphotyrosine(INSR)HMM predict
80Phosphothreonine(PKC)HMM predict
128Phosphoserine(PKA)HMM predict
128Phosphoserine(PKG)HMM predict
151Phosphoserine(CK1)HMM predict
156Phosphotyrosine(EGFR)HMM predict
156Phosphotyrosine(INSR)HMM predict
299SulfotyrosineHMM predict
423Phosphoserine(PKG)HMM predict
492Phosphoserine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_130808
  • Location:chr3 132736273-133236533
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 133236494 133236681 187 54
NRSF JurkatGSE13047 133236082 133237456 1374 236
NRSF mAbJurkat 133238057 133238276 219 1633
NRSF mAbJurkat 133238581 133240298 1717 2906
NRSF mAbJurkat 133242188 133242834 646 5978
NRSF mAbJurkat 133243250 133245252 2002 7718
Nanog hESGSE18292 133239702 133240097 395 3366
Sox2 hESGSE18292 133239691 133240112 421 3368
hScc1 BcellGSE12603 133236364 133236750 386 24
hScc1 CdLSGSE12603 133239639 133240298 659 3435
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 132728057 132728668 611 7911
Oct1 H2O2-HelaGSE14283 132735776 132735805 29 483
Oct1 HelaGSE14283 132735770 132735805 35 486
hScc1 BcellGSE12603 132728202 132728886 684 7730
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 133015944 133016351 407 0
CBP T0-glioblastomaGSE21026 133159982 133160557 575 0
CBP T30-glioblastomaGSE21026 133015900 133016159 259 0
CTCF CD4GSE12889 132996391 132996557 166 0
CTCF CD4GSE12889 133208226 133208456 230 0
CTCF CD4GSE12889 133230903 133231215 312 0
CTCF CD4SISSRdata 132996391 132996557 166 0
CTCF CD4SISSRdata 133208226 133208456 230 0
CTCF CD4SISSRdata 133230903 133231215 312 0
CTCF JurkatGSE12889 132996246 132996729 483 0
CTCF G2GSE9613 132996152 132996812 660 0
CTCF G2GSE9613 133208234 133208625 391 0
CTCF G2GSE9613 133230487 133231233 746 0
CTCF G2GSE9613 133236113 133236783 670 0
ER Fulvestrant-MCF7GSE14664 133113652 133113718 66 0
FOXA1 MCF7GSE15244 132802804 132803345 541 0
FOXA1 MCF7GSE15244 132930468 132930723 255 0
FOXA1 MCF7GSE15244 133001785 133002042 257 0
FOXA1 MCF7GSE15244 133230524 133231463 939 0
FoxA1 MCF7MACSdata 132939734 132939888 154 0
FoxA1 MCF7MACSdata 133230708 133231061 353 0
H3K27me3 colorectalcancer 133234421 133236750 2329 0
NFkBII GM12878GSE19485 132932465 132934034 1569 0
NFkBII GM12892GSE19485 132914820 132917372 2552 0
NFkBII GM18505GSE19485 132933001 132934063 1062 0
NFkBII GM18526GSE19485 132932718 132934091 1373 0
NRSF mAbJurkat 133233781 133237707 3926 0
NRSF-mono JurkatQuESTdata 133235806 133237157 1351 0
NRSF-poly JurkatQuESTdata 133235755 133237146 1391 0
Nanog hESGSE18292 132871202 132871579 377 0
Nanog hESGSE18292 133020818 133021025 207 0
Oct1 H2O2-HelaGSE14283 132776579 132776606 27 0
Oct1 H2O2-HelaGSE14283 132785810 132785840 30 0
Oct1 H2O2-HelaGSE14283 132900660 132900699 39 0
Oct1 H2O2-HelaGSE14283 132914518 132914544 26 0
Oct1 H2O2-HelaGSE14283 133223579 133223612 33 0
Oct1 HelaGSE14283 132785804 132785840 36 0
Oct1 HelaGSE14283 132888653 132888697 44 0
Oct1 HelaGSE14283 132896511 132896558 47 0
Oct1 HelaGSE14283 132900655 132900705 50 0
Oct1 HelaGSE14283 133007246 133007278 32 0
Oct1 HelaGSE14283 133014729 133014790 61 0
Oct4 hESGSE17917 132996331 132996607 276 0
P300 T0-glioblastomaGSE21026 133015945 133016161 216 0
P300 T0-glioblastomaGSE21026 133160343 133160557 214 0
P300 T30-glioblastomaGSE21026 133105255 133105936 681 0
P300 T30-glioblastomaGSE21026 133160126 133160748 622 0
RARA MCF7GSE15244 132930468 132931127 659 0
RARA MCF7GSE15244 133230487 133231463 976 0
RARG MCF7GSE15244 132930468 132930688 220 0
TFAP2C MCF7GSE21234 132914901 132915453 552 0
TFAP2C MCF7GSE21234 132930361 132930977 616 0
TFAP2C MCF7GSE21234 133013969 133014405 436 0
TFAP2C MCF7GSE21234 133230538 133231229 691 0
hScc1 BcellGSE12603 132765876 132766163 287 0
hScc1 BcellGSE12603 132916624 132916961 337 0
hScc1 BcellGSE12603 132996292 132996683 391 0
hScc1 BcellGSE12603 133230487 133231307 820 0
hScc1 CdLSGSE12603 132750911 132751474 563 0
hScc1 CdLSGSE12603 132755275 132755530 255 0
hScc1 CdLSGSE12603 132996189 132996812 623 0
hScc1 CdLSGSE12603 133230487 133231307 820 0
hScc1 G2GSE9613 132996152 132996812 660 0
hScc1 G2GSE9613 133230487 133231307 820 0
hScc1 G2GSE9613 133236113 133236750 637 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18695 EST chr3 132811858 132889807 77949 mRNA CPNE4 chr3 132736276 133236542 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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