Annotation Detail for COMP
Basic Information Top
| Gene Symbol: | COMP ( EDM1,EPD1,MED,MGC131819,MGC149768,PSACH,THBS5 ) |
|---|---|
| Gene Full Name: | cartilage oligomeric matrix protein |
| Band: | 19p13.11 |
| Quick Links | Entrez ID:1311; OMIM: 600310; Uniprot ID:COMP_HUMAN; ENSEMBL ID: ENSG00000105664; HGNC ID: 2227 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 121 | N-linked (GlcNAc...) (Potential). | |
| 369 | Cell attachment site (Potential). | |
| 742 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 121 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 742 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 24 | Phosphoserine(CDC2) | HMM predict |
| 24 | Phosphoserine(IKK) | HMM predict |
| 114 | S-palmitoyl | HMM predict |
| 121 | N-linked | HMM predict |
| 158 | Phosphotyrosine(Abl) | HMM predict |
| 159 | O-linked | HMM predict |
| 209 | S-palmitoyl | HMM predict |
| 339 | Phosphothreonine(CK2) | HMM predict |
| 596 | Sulfotyrosine | HMM predict |
| 741 | Cysteine | HMM predict |
| 742 | N-linked | HMM predict |
- RefSeq ID: NM_000095
- Location:chr19 18754582-18763113
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K27me3 | colorectal | cancer | 18763071 | 18763331 | 260 | 88 |
| H3K27me3 | colorectal | cancer | 18768054 | 18768443 | 389 | 5135 |
| P300 | T30-glioblastoma | GSE21026 | 18781107 | 18781765 | 658 | 18323 |
| RARA | MCF7 | GSE15244 | 18770296 | 18770938 | 642 | 7504 |
| hScc1 | Bcell | GSE12603 | 18772207 | 18772938 | 731 | 9459 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| hScc1 | Bcell | GSE12603 | 18752299 | 18752901 | 602 | 1983 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 18757382 | 18757977 | 595 | 0 |
| CTCF | G2 | GSE9613 | 18760313 | 18760547 | 234 | 0 |
| H3K27me3 | colorectal | cancer | 18762085 | 18762651 | 566 | 0 |
| SRF | GMO | GSE8489 | 18761906 | 18762686 | 780 | 0 |
| hScc1 | Bcell | GSE12603 | 18756687 | 18757298 | 611 | 0 |
| hScc1 | Bcell | GSE12603 | 18757837 | 18758196 | 359 | 0 |
| hScc1 | Bcell | GSE12603 | 18760011 | 18760764 | 753 | 0 |
| hScc1 | Bcell | GSE12603 | 18762051 | 18763298 | 1247 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-199a-3p | hsa-mir-199a-1 | 19 | 19251704 |
| hsa-miR-199a-3p | hsa-mir-199a-2 | 1 | 19251704 |
| hsa-miR-200b | hsa-mir-200b | 1 | 18573151 |
| hsa-miR-200b* | hsa-mir-200b | 1 | 18573151 |
| hsa-miR-25 | hsa-mir-25 | 7 | 18573151 |
| hsa-miR-25* | hsa-mir-25 | 7 | 18573151 |
| hsa-miR-26a | hsa-mir-26a-1 | 3 | 18573151 |
| hsa-miR-26a | hsa-mir-26a-2 | 12 | 18573151 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18573151 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18573151 |
| hsa-miR-337-3p | hsa-mir-337 | 14 | 18573151 |
| hsa-miR-337-5p | hsa-mir-337 | 14 | 18573151 |
| hsa-miR-377 | hsa-mir-377 | 14 | 18573151 |
| hsa-miR-377* | hsa-mir-377 | 14 | 18573151 |
| hsa-miR-423-3p | hsa-mir-423 | 17 | 18573151 |
| hsa-miR-423-5p | hsa-mir-423 | 17 | 18573151 |
| hsa-miR-489 | hsa-mir-489 | 7 | 18573151 |
| hsa-miR-496 | hsa-mir-496 | 14 | 18573151 |
| hsa-miR-515-3p | hsa-mir-515-1 | 19 | 18573151 |
| hsa-miR-515-3p | hsa-mir-515-2 | 19 | 18573151 |
| hsa-miR-9 | hsa-mir-9-1 | 1 | 18573151 |
| hsa-miR-9 | hsa-mir-9-2 | 5 | 18573151 |
| hsa-miR-9 | hsa-mir-9-3 | 15 | 18573151 |
| No data |
Cis-Nats regulation