AutismKB 2.0

Annotation Detail for COPA


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Basic Information Top
Gene Symbol:COPA ( FLJ26320,HEP-COP )
Gene Full Name: coatomer protein complex, subunit alpha
Band: 1q23.2
Quick LinksEntrez ID:1314; OMIM: 601924; Uniprot ID:COPA_HUMAN; ENSEMBL ID: ENSG00000122218; HGNC ID: 2230
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
173Phosphoserine.
249Phosphotyrosine.
402Phosphoserine.
895Phosphoserine.
1035Phosphoserine (By similarity).
Location(AA) Modifications Resource
173Phosphoserine.Swiss-Prot 53.0
173PhosphoserinePhospho.ELM 6.0
249Phosphotyrosine.Swiss-Prot 53.0
402Phosphoserine.Swiss-Prot 53.0
402PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
105SulfotyrosineHMM predict
173Phosphoserine(CDC2)HMM predict
235N-linkedHMM predict
388N-linkedHMM predict
391Phosphotyrosine(SRC)HMM predict
402Phosphoserine(ATM)HMM predict
489Phosphoserine(PKG)HMM predict
773Phosphoserine(CK1)HMM predict
895Phosphoserine(ATM)HMM predict
914Phosphothreonine(PKA)HMM predict
922N-linkedHMM predict
923N-linkedHMM predict
1141Phosphothreonine(PKC)HMM predict
1151N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004371
  • Location:chr1 158525685-158580078
  • strand:-
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 158527807 158528150 343 0
CTCF CD4SISSRdata 158527807 158528150 343 0
CTCF G2GSE9613 158527175 158528929 1754 0
ETS1 JurkatGSE17954 158578835 158580251 1416 0
Myc K562GSE19551 158527680 158528100 420 0
Oct1 H2O2-HelaGSE14283 158550654 158550682 28 0
Oct1 H2O2-HelaGSE14283 158554018 158554043 25 0
Oct1 HelaGSE14283 158550327 158550358 31 0
Oct1 HelaGSE14283 158550640 158550682 42 0
Oct1 HelaGSE14283 158554018 158554044 26 0
Oct1 HelaGSE14283 158561829 158561909 80 0
Oct1 HelaGSE14283 158572962 158573031 69 0
PHF8 Hs68minusFBSGSE20725 158578880 158580293 1413 0
PHF8 Hs68plusFBSGSE20725 158578629 158580420 1791 0
TAF HelaGSE8489 158578728 158579743 1015 0
TAF k562GSE8489 158578256 158579743 1487 0
hScc1 CdLSGSE12603 158527580 158528223 643 0
p130 shRbQuiescentGSE19898 158578885 158580289 1404 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1803 mRNA NCSTN chr1 157126134 157141811 180 mRNA COPA chr1 157072134 157126528Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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