AutismKB 2.0

Annotation Detail for CPT1A


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Basic Information Top
Gene Symbol:CPT1A ( CPT1,CPT1-L,L-CPT1 )
Gene Full Name: carnitine palmitoyltransferase 1A (liver)
Band: 11q13.3
Quick LinksEntrez ID:1374; OMIM: 600528; Uniprot ID:CPT1A_HUMAN; ENSEMBL ID: ENSG00000110090; HGNC ID: 2328
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine (By similarity).
588Phosphothreonine (By similarity).
604Phosphothreonine (By similarity).
741Phosphoserine (By similarity).
747Phosphoserine (By similarity).
Location(AA) Modifications Resource
2N-acetylalanine (By similarity).Swiss-Prot 53.0
588Phosphothreonine (By similarity).Swiss-Prot 53.0
604Phosphothreonine (By similarity).Swiss-Prot 53.0
741Phosphoserine (By similarity).Swiss-Prot 53.0
747Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
34Phosphoserine(CDK)HMM predict
58Phosphoserine(MAPK)HMM predict
88N-linkedHMM predict
125Phosphoserine(PKG)HMM predict
203Phosphothreonine(PKA)HMM predict
254Phosphotyrosine(Syk)HMM predict
255Phosphotyrosine(Syk)HMM predict
313N-linkedHMM predict
369N-linkedHMM predict
371Phosphoserine(CK1)HMM predict
427Phosphotyrosine(INSR)HMM predict
427SulfotyrosineHMM predict
565Phosphoserine(MAPK)HMM predict
604Phosphothreonine(PKC)HMM predict
607O-linkedHMM predict
625Phosphothreonine(PKC)HMM predict
625O-linkedHMM predict
685O-linkedHMM predict
687Phosphoserine(IKK)HMM predict
687Phosphoserine(ATM)HMM predict
689Phosphothreonine(CDK)HMM predict
689Phosphothreonine(CDC2)HMM predict
689Phosphothreonine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001876
  • Location:chr11 68281144-68365880
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 68368015 68368231 216 2243
CTCF CD4SISSRdata 68368015 68368231 216 2243
CTCF JurkatGSE12889 68368031 68368252 221 2261
NRSF pAbJurkat 68370503 68370759 256 4751
P300 T0-glioblastomaGSE21026 68381221 68382232 1011 15846
P300 T30-glioblastomaGSE21026 68381281 68381963 682 15742
STAT1 IFNSISSRdata 68381042 68382219 1177 15750
hScc1 BcellGSE12603 68367724 68368490 766 2227
hScc1 BcellGSE12603 68373217 68373418 201 7437
hScc1 CdLSGSE12603 68367724 68368203 479 2083
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 68349747 68349953 206 0
CTCF CD4SISSRdata 68349747 68349953 206 0
CTCF JurkatGSE12889 68322360 68322559 199 0
ER E2-MCF7GSE14664 68307087 68307121 34 0
ER MCF7GSE19013 68343554 68344085 531 0
FOXA1 MCF7GSE15244 68287207 68288104 897 0
FOXA1 MCF7GSE15244 68288649 68288982 333 0
FOXA1 MCF7GSE15244 68341254 68342020 766 0
FOXA1 MCF7GSE15244 68343434 68344013 579 0
FOXA1 MCF7GSE15244 68356603 68357489 886 0
FOXA1 MCF7GSE15244 68362917 68364411 1494 0
Fos K562GSE19551 68304833 68305383 550 0
FoxA1 MCF7MACSdata 68287231 68287541 310 0
GATA3 MCF7GSE15244 68325172 68325349 177 0
GATA3 MCF7GSE15244 68343434 68344013 579 0
GATA3 MCF7GSE15244 68356603 68357489 886 0
GATA3 MCF7GSE15244 68363225 68364474 1249 0
H3K4me3 colorectalcancer 68364217 68364636 419 0
H3ac HepG2E 68364181 68364662 481 0
KLF4 hESGSE17917 68340036 68340370 334 0
NRSF pAbJurkat 68288104 68289092 988 0
NRSF pAbJurkat 68307078 68307635 557 0
NRSF pAbJurkat 68341541 68341947 406 0
NRSF pAbJurkat 68349523 68349881 358 0
NRSF pAbJurkat 68361399 68361586 187 0
NRSF pAbJurkat 68364830 68365381 551 0
Oct1 H2O2-HelaGSE14283 68298366 68298402 36 0
Oct1 H2O2-HelaGSE14283 68332072 68332113 41 0
Oct1 HelaGSE14283 68298366 68298413 47 0
Oct1 HelaGSE14283 68307551 68307586 35 0
Oct1 HelaGSE14283 68332077 68332123 46 0
Oct1 HelaGSE14283 68335134 68335162 28 0
Oct1 HelaGSE14283 68355130 68355163 33 0
Oct1 HelaGSE14283 68355511 68355593 82 0
RARA MCF7GSE15244 68287207 68288046 839 0
RARA MCF7GSE15244 68343434 68344013 579 0
RARA MCF7GSE15244 68356603 68357489 886 0
RARA MCF7GSE15244 68362917 68364662 1745 0
RARG MCF7GSE15244 68287207 68287872 665 0
RARG MCF7GSE15244 68343434 68344013 579 0
RARG MCF7GSE15244 68356603 68357489 886 0
RARG MCF7GSE15244 68362917 68364474 1557 0
Rb QuiescentGSE19898 68298116 68298310 194 0
Rb SenescentGSE19898 68363168 68363613 445 0
Sox2 hESGSE18292 68364667 68364865 198 0
TAF HelaGSE8489 68313084 68313415 331 0
TFAP2C MCF7GSE21234 68287021 68287885 864 0
TFAP2C MCF7GSE21234 68294685 68295180 495 0
TFAP2C MCF7GSE21234 68300014 68300489 475 0
TFAP2C MCF7GSE21234 68322136 68322740 604 0
USF1 HepG2E 68359908 68360198 290 0
USF1 HepG2E 68361399 68362580 1181 0
USF1 HepG2E 68362917 68364894 1977 0
USF2 HepG2E 68362917 68364695 1778 0
hScc1 BcellGSE12603 68287872 68288649 777 0
hScc1 BcellGSE12603 68306561 68307635 1074 0
hScc1 BcellGSE12603 68316485 68316782 297 0
hScc1 BcellGSE12603 68322066 68322605 539 0
hScc1 BcellGSE12603 68339786 68340168 382 0
hScc1 BcellGSE12603 68349242 68349881 639 0
hScc1 BcellGSE12603 68364792 68365621 829 0
hScc1 CdLSGSE12603 68364729 68365158 429 0
hScc1 G2GSE9613 68334251 68334394 143 0
hScc1 G2GSE9613 68364830 68365621 791 0
p130 QuiescentGSE19898 68298066 68298478 412 0
p130 QuiescentGSE19898 68363300 68363640 340 0
p130 SenescentGSE19898 68297956 68298374 418 0
p130 shRbQuiescentGSE19898 68298031 68298724 693 0
p130 shRbSenescentGSE19898 68297907 68298259 352 0
p130 shRbSenescentGSE19898 68363179 68363465 286 0
p63 keratinocytesGSE17611 68341959 68342834 875 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-122 hsa-mir-122 18 20124555
hsa-miR-122* hsa-mir-122 18 20124555
hsa-miR-33a hsa-mir-33a 22 20732877
hsa-miR-33a* hsa-mir-33a 22 20732877
hsa-miR-370 hsa-mir-370 14 20124555
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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