Annotation Detail for C9orf41
Basic Information Top
| Gene Symbol: | C9orf41 ( FLJ25795 ) |
|---|---|
| Gene Full Name: | chromosome 9 open reading frame 41 |
| Band: | 9q21.13 |
| Quick Links | Entrez ID:138199; OMIM: NA; Uniprot ID:CI041_HUMAN; ENSEMBL ID: ENSG00000156017; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 44 | O-linked | HMM predict |
| 44 | O-linked | HMM predict |
| 54 | Phosphothreonine(CK2) | HMM predict |
| 76 | Sulfotyrosine | HMM predict |
| 78 | Phosphothreonine(PKC) | HMM predict |
| 85 | N-linked | HMM predict |
| 93 | Phosphoserine(IKK) | HMM predict |
| 324 | Sulfotyrosine | HMM predict |
| 356 | Phosphoserine(CK1) | HMM predict |
| 384 | Phosphoserine(CK1) | HMM predict |
- RefSeq ID: NM_152420
- Location:chr9 76787694-76833129
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| P300 | T30-glioblastoma | GSE21026 | 76838561 | 76839360 | 799 | 5831 |
| PHF8 | 293T | GSE20725 | 76832745 | 76833776 | 1031 | 131 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 76806965 | 76807284 | 319 | 0 |
| CTCF | CD4 | SISSRdata | 76806965 | 76807284 | 319 | 0 |
| H3K4me3 | colorectal | cancer | 76831778 | 76832390 | 612 | 0 |
| H3ac | HepG2 | E | 76830921 | 76832552 | 1631 | 0 |
| Nanog | hES | GSE18292 | 76806940 | 76807186 | 246 | 0 |
| PHF8 | HeLa | GSE20725 | 76832143 | 76833904 | 1761 | 0 |
| PHF8 | Hs68minusFBS | GSE20725 | 76831984 | 76833635 | 1651 | 0 |
| PHF8 | Hs68plusFBS | GSE20725 | 76831980 | 76833572 | 1592 | 0 |
| Rb | Senescent | GSE19898 | 76832672 | 76832961 | 289 | 0 |
| TAF | k562 | GSE8489 | 76830921 | 76831494 | 573 | 0 |
| hScc1 | Bcell | GSE12603 | 76832613 | 76833071 | 458 | 0 |
| hScc1 | CdLS | GSE12603 | 76806732 | 76807109 | 377 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26595 | mRNA | chr9 | 74857247 | 74858490 | 1243 | mRNA | C9orf41 | chr9 | 74827426 | 74872864 | Non-exonic Bidirectional (NOB) pairs | |