Annotation Detail for CSF1
Basic Information Top
| Gene Symbol: | CSF1 ( MCSF,MGC31930 ) |
|---|---|
| Gene Full Name: | colony stimulating factor 1 (macrophage) |
| Band: | 1p13.3 |
| Quick Links | Entrez ID:1435; OMIM: 120420; Uniprot ID:CSF1_HUMAN; ENSEMBL ID: ENSG00000184371; HGNC ID: 2432 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 154 | N-linked (GlcNAc...) (Potential). | |
| 172 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 154 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 172 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 24 | S-palmitoyl | HMM predict |
| 154 | N-linked | HMM predict |
| 158 | N-linked | HMM predict |
| 172 | N-linked | HMM predict |
| 173 | N-linked | HMM predict |
| 180 | Phosphoserine(CK1) | HMM predict |
| 200 | Phosphoserine(ATM) | HMM predict |
| 200 | O-linked | HMM predict |
| 204 | O-linked | HMM predict |
| 206 | Phosphoserine(IKK) | HMM predict |
| 260 | Phosphoserine(IKK) | HMM predict |
| 277 | Phosphoserine(CDC2) | HMM predict |
| 277 | Phosphoserine(CDK) | HMM predict |
| 283 | O-linked | HMM predict |
| 309 | Phosphoserine(CK2) | HMM predict |
| 313 | O-linked | HMM predict |
| 324 | Phosphoserine(CDK) | HMM predict |
| 324 | Phosphoserine(CDC2) | HMM predict |
| 324 | O-linked | HMM predict |
| 348 | Phosphoserine(CDC2) | HMM predict |
| 381 | N-linked | HMM predict |
| 383 | Phosphothreonine(CDK) | HMM predict |
| 383 | Phosphothreonine(CDC2) | HMM predict |
| 402 | Phosphoserine(CDC2) | HMM predict |
| 407 | Phosphoserine(PKB) | HMM predict |
| 414 | Phosphoserine(IKK) | HMM predict |
| 417 | O-linked | HMM predict |
| 430 | Phosphoserine(IKK) | HMM predict |
| 430 | Phosphoserine(CK1) | HMM predict |
| 446 | Phosphothreonine(PKC) | HMM predict |
| 446 | Phosphothreonine(PKA) | HMM predict |
| 451 | Phosphoserine(CDC2) | HMM predict |
| 451 | Phosphoserine(IKK) | HMM predict |
| 473 | Phosphoserine(IKK) | HMM predict |
| 485 | O-linked | HMM predict |
| 488 | Phosphoserine(CK1) | HMM predict |
| 490 | Phosphoserine(CDC2) | HMM predict |
| 524 | Phosphoserine(PKG) | HMM predict |
| 533 | Phosphoserine(CDC2) | HMM predict |
| 533 | Phosphoserine(IKK) | HMM predict |
- RefSeq ID: NM_000757
- Location:chr1 110254979-110273876
- strand:+
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 110277932 | 110278423 | 491 | 4301 |
| ER | MCF7 | GSE19013 | 110291950 | 110292797 | 847 | 18497 |
| Oct1 | H2O2-Hela | GSE14283 | 110274212 | 110274239 | 27 | 349 |
| RARA | MCF7 | GSE15244 | 110292148 | 110292606 | 458 | 18501 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 110272741 | 110272992 | 251 | 0 |
| hScc1 | Bcell | GSE12603 | 110272705 | 110273270 | 565 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7e | hsa-let-7e | 19 | 18823650 |
| hsa-let-7e* | hsa-let-7e | 19 | 18823650 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 14697198 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 14697198 |
| hsa-miR-101 | hsa-mir-101-1 | 1 | 14697198 |
| hsa-miR-101 | hsa-mir-101-2 | 9 | 14697198 |
| hsa-miR-106a | hsa-mir-106a | X | 17589498 |
| hsa-miR-106a* | hsa-mir-106a | X | 17589498 |
| hsa-miR-125b | hsa-mir-125b-1 | 11 | 18823650 |
| hsa-miR-125b | hsa-mir-125b-2 | 21 | 18823650 |
| hsa-miR-130a | hsa-mir-130a | 11 | 18823650 |
| hsa-miR-130a | hsa-mir-130a | 11 | 14697198 |
| hsa-miR-130a* | hsa-mir-130a | 11 | 18823650 |
| hsa-miR-130a* | hsa-mir-130a | 11 | 14697198 |
| hsa-miR-17 | hsa-mir-17 | 13 | 17589498 |
| hsa-miR-17* | hsa-mir-17 | 13 | 17589498 |
| hsa-miR-19a | hsa-mir-19a | 13 | 14697198 |
| hsa-miR-19a* | hsa-mir-19a | 13 | 14697198 |
| hsa-miR-20a | hsa-mir-20a | 13 | 17589498 |
| hsa-miR-20a* | hsa-mir-20a | 13 | 17589498 |
| hsa-miR-223 | hsa-mir-223 | X | 19059913 |
| hsa-miR-223* | hsa-mir-223 | X | 19059913 |
| hsa-miR-23a | hsa-mir-23a | 19 | 14697198 |
| hsa-miR-23a* | hsa-mir-23a | 19 | 14697198 |
| hsa-miR-23b | hsa-mir-23b | 9 | 14697198 |
| hsa-miR-23b* | hsa-mir-23b | 9 | 14697198 |
| hsa-miR-26a | hsa-mir-26a-1 | 3 | 14697198 |
| hsa-miR-26a | hsa-mir-26a-2 | 12 | 14697198 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18823650 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18823650 |
| hsa-miR-335 | hsa-mir-335 | 7 | 18823650 |
| hsa-miR-335* | hsa-mir-335 | 7 | 18823650 |
| hsa-miR-34a | hsa-mir-34a | 1 | 14697198 |
| hsa-miR-34a* | hsa-mir-34a | 1 | 14697198 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 442 | mRNA repression | TRUE | miR-130 | CSF1 / MCSF | in vitro reporter gene assay (Luciferase) | 14697198 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000184371 | n_a | n_a | n_a | muscle cell | "benign tumour, malignant tumour, carcinoma, leukaemia" |
Cis-Nats regulation