AutismKB 2.0

Annotation Detail for LRFN5


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Basic Information Top
Gene Symbol:LRFN5 ( C14orf146,DKFZp686G0210,FIGLER8,FLJ30803,SALM5 )
Gene Full Name: leucine rich repeat and fibronectin type III domain containing 5
Band: 14q21.1
Quick LinksEntrez ID:145581; OMIM: 612811; Uniprot ID:LRFN5_HUMAN; ENSEMBL ID: ENSG00000165379; HGNC ID: 20360
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
73N-linked (GlcNAc...) (Potential).
330N-linked (GlcNAc...) (Potential).
339N-linked (GlcNAc...) (Potential).
382N-linked (GlcNAc...) (Potential).
406N-linked (GlcNAc...) (Potential).
452N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
73N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
330N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
339N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
382N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
406N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
452N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
73N-linkedHMM predict
255Phosphoserine(PKG)HMM predict
255Phosphoserine(PKC)HMM predict
305Phosphothreonine(PKC)HMM predict
305Phosphothreonine(PKA)HMM predict
330N-linkedHMM predict
339N-linkedHMM predict
382N-linkedHMM predict
385N-linkedHMM predict
394Phosphoserine(IKK)HMM predict
395O-linkedHMM predict
400O-linkedHMM predict
403O-linkedHMM predict
403Phosphoserine(IKK)HMM predict
405O-linkedHMM predict
405Phosphoserine(IKK)HMM predict
406N-linkedHMM predict
407O-linkedHMM predict
409Phosphoserine(CK1)HMM predict
411N-linkedHMM predict
428Phosphoserine(CK1)HMM predict
452N-linkedHMM predict
522Phosphoserine(ATM)HMM predict
564Phosphothreonine(PKA)HMM predict
570Phosphotyrosine(Abl)HMM predict
573O-linkedHMM predict
588Phosphoserine(CDK)HMM predict
590O-linkedHMM predict
606Phosphothreonine(PKA)HMM predict
619Phosphoserine(IKK)HMM predict
622Phosphoserine(IKK)HMM predict
622O-linkedHMM predict
622Phosphoserine(CK1)HMM predict
623Phosphoserine(IKK)HMM predict
625O-linkedHMM predict
625O-linkedHMM predict
626O-linkedHMM predict
627O-linkedHMM predict
632Phosphoserine(IKK)HMM predict
632O-linkedHMM predict
636O-linkedHMM predict
637PhosphothreonineHMM predict
640Phosphoserine(ATM)HMM predict
672N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152447
  • Location:chr14 41147093-41443497
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 41145710 41146009 299 1234
H3K27me3 colorectalcancer 41143706 41145542 1836 2470
Oct1 HelaGSE14283 41130883 41130910 27 16197
RARG MCF7GSE15244 41143673 41144412 739 3051
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FoxA1 MCF7MACSdata 41179107 41179371 264 0
H3K27me3 colorectalcancer 41146137 41148676 2539 0
NRSF-poly JurkatQuESTdata 41345615 41345935 320 0
Nanog ESGSE20650 41181275 41181744 469 0
Nanog ESGSE20650 41324762 41325086 324 0
Oct1 HelaGSE14283 41384286 41384319 33 0
RARG MCF7GSE15244 41281468 41281977 509 0
Stat6 IL-4-hr1GSE17850 41439497 41440080 583 0
TFAP2C MCF7GSE21234 41175488 41176099 611 0
TFAP2C MCF7GSE21234 41178987 41179379 392 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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