AutismKB 2.0

Annotation Detail for LYSMD4


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Basic Information Top
Gene Symbol:LYSMD4 ( FLJ33008,MGC99501 )
Gene Full Name: LysM, putative peptidoglycan-binding, domain containing 4
Band: 15q26.3
Quick LinksEntrez ID:145748; OMIM: NA; Uniprot ID:LYSM4_HUMAN; ENSEMBL ID: ENSG00000183060; HGNC ID: 26571
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
30N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
30N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
30N-linkedHMM predict
35Phosphoserine(IKK)HMM predict
39Phosphoserine(CK2)HMM predict
39PhosphoserineHMM predict
138Phosphoserine(MAPK)HMM predict
138Phosphoserine(CDC2)HMM predict
141O-linkedHMM predict
144O-linkedHMM predict
248Phosphothreonine(CDK)HMM predict
251Phosphoserine(IKK)HMM predict
253N-linkedHMM predict
259N-linkedHMM predict
282O-linkedHMM predict
286Phosphoserine(ATM)HMM predict
286O-linkedHMM predict
289Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152449
  • Location:chr15 98085136-98091148
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TAF HelaGSE8489 98092141 98092406 265 1125
p130 QuiescentGSE19898 98091306 98091496 190 253
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 98087772 98087956 184 0
CTCF CD4SISSRdata 98087772 98087956 184 0
CTCF G2GSE9613 98086008 98086431 423 0
CTCF G2GSE9613 98087593 98088083 490 0
CTCF G2GSE9613 98090412 98091253 841 0
Oct1 HelaGSE14283 98086764 98086802 38 0
Oct1 HelaGSE14283 98087330 98087357 27 0
PHF8 293TGSE20725 98090437 98091816 1379 0
TFAP2C MCF7GSE21234 98087552 98087954 402 0
hScc1 BcellGSE12603 98087633 98088007 374 0
hScc1 BcellGSE12603 98090198 98091582 1384 0
hScc1 CdLSGSE12603 98087523 98088047 524 0
hScc1 G2GSE9613 98086962 98088121 1159 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9363 mRNA MEF2A chr15 97990733 98074131 701 HTC FLJ33008 chr15 98073430 98091119Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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