Annotation Detail for RLTPR

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Basic Information Top

Gene Symbol:	RLTPR ( CARMIL2,CARMIL2b,LRRC16C )
Gene Full Name:	RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing
Band:	16q22.1
Quick Links	Entrez ID:146206; OMIM: 610859; Uniprot ID:LR16C_HUMAN; ENSEMBL ID: ENSG00000159753; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:4 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
991	Phosphoserine.
993	Phosphoserine.
1120	Phosphoserine.
1246	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001013838
Location:chr16 66236530-66248970
strand:+

Upstream the gene:8 results
Downstream the gene:0 results
Inside the gene:9 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T0-glioblastoma	GSE21026	66233526	66234251	725	2642
CTCF	CD4	GSE12889	66236096	66236351	255	307
CTCF	CD4	SISSRdata	66236096	66236351	255	307
CTCF	Jurkat	GSE12889	66236140	66236429	289	246
CTCF	G2	GSE9613	66236052	66236563	511	223
P300	T0-glioblastoma	GSE21026	66233316	66234290	974	2728
P300	T30-glioblastoma	GSE21026	66233234	66234366	1132	2731
hScc1	CdLS	GSE12603	66236052	66236771	719	119

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	66244040	66244495	455	0
H3K27me3	colorectal	cancer	66241547	66242876	1329	0
NRSF	Jurkat	GSE13047	66243933	66244519	586	0
NRSF	mAb	Jurkat	66242012	66243214	1202	0
NRSF-mono	Jurkat	QuESTdata	66243900	66244502	602	0
NRSF-poly	Jurkat	QuESTdata	66243847	66244653	806	0
hScc1	Bcell	GSE12603	66236052	66237965	1913	0
hScc1	Bcell	GSE12603	66240082	66240321	239	0
hScc1	Bcell	GSE12603	66244180	66244757	577	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
10137	mRNA	RLTPR	chr16	66236530	66248971	38	mRNA	ACD	chr16	66248933	66252214	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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