AutismKB 2.0

Annotation Detail for RTN4RL1


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Basic Information Top
Gene Symbol:RTN4RL1 ( DKFZp547J144,NGRH2,NgR3 )
Gene Full Name: reticulon 4 receptor-like 1
Band: 17p13.3
Quick LinksEntrez ID:146760; OMIM: 610461; Uniprot ID:R4RL1_HUMAN; ENSEMBL ID: ENSG00000185924; HGNC ID: 21329
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
87N-linkedHMM predict
224Phosphothreonine(PKA)HMM predict
230N-linkedHMM predict
231N-linkedHMM predict
234Phosphoserine(CK1)HMM predict
303N-linkedHMM predict
338O-linkedHMM predict
355N-linkedHMM predict
358N-linkedHMM predict
361N-linkedHMM predict
380Phosphotyrosine(INSR)HMM predict
380SulfotyrosineHMM predict
395O-linkedHMM predict
408Phosphothreonine(CDK)HMM predict
424Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_178568
  • Location:chr17 1784722-1874927
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 1875891 1876572 681 1304
H3K27me3 colorectalcancer 1876298 1876572 274 1508
hScc1 BcellGSE12603 1875059 1876437 1378 821
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 1767987 1768523 536 16468
H3ac HepG2E 1767776 1768479 703 16595
RARA MCF7GSE15244 1767851 1768435 584 16580
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 1786864 1787370 506 0
CTCF G2GSE9613 1849892 1850351 459 0
CTCF G2GSE9613 1859865 1860104 239 0
CTCF G2GSE9613 1868909 1869097 188 0
CTCF G2GSE9613 1873817 1874260 443 0
ER MCF7GSE19013 1795578 1796821 1243 0
FoxA1 MCF7MACSdata 1868793 1869055 262 0
GABP HelaGSE8489 1863619 1863843 224 0
H3ac HepG2E 1826484 1826784 300 0
H3ac HepG2E 1846805 1847753 948 0
H3ac HepG2E 1849535 1849827 292 0
Myc hESGSE17917 1847927 1848249 322 0
RARA MCF7GSE15244 1861327 1862393 1066 0
RARG MCF7GSE15244 1861327 1862393 1066 0
TFAP2C MCF7GSE21234 1793548 1793956 408 0
TFAP2C MCF7GSE21234 1795544 1796437 893 0
TFAP2C MCF7GSE21234 1816045 1817703 1658 0
TFAP2C MCF7GSE21234 1831443 1831964 521 0
TFAP2C MCF7GSE21234 1849575 1850460 885 0
TFAP2C MCF7GSE21234 1861325 1862212 887 0
TFAP2C MCF7GSE21234 1872474 1873053 579 0
USF1 HepG2E 1810552 1811663 1111 0
USF2 HepG2E 1810845 1811663 818 0
USF2 HepG2E 1847166 1847642 476 0
hScc1 BcellGSE12603 1784414 1785390 976 0
hScc1 BcellGSE12603 1787735 1788289 554 0
hScc1 BcellGSE12603 1790561 1790929 368 0
hScc1 BcellGSE12603 1793092 1793555 463 0
hScc1 BcellGSE12603 1810298 1810939 641 0
hScc1 BcellGSE12603 1815894 1816143 249 0
hScc1 BcellGSE12603 1827313 1827496 183 0
hScc1 BcellGSE12603 1850041 1850351 310 0
hScc1 BcellGSE12603 1863669 1863843 174 0
p63 keratinocytesGSE17611 1831240 1832209 969 0
p63 keratinocytesGSE17611 1838796 1839625 829 0
p63 keratinocytesGSE17611 1847080 1848031 951 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10465 mRNA chr17 1867926 1870749 2823 mRNA RTN4RL1 chr17 1784722 1874928 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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