Annotation Detail for ANKRD29

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Basic Information Top

Gene Symbol:	ANKRD29 ( FLJ25053 )
Gene Full Name:	ankyrin repeat domain 29
Band:	18q11.2
Quick Links	Entrez ID:147463; OMIM: NA; Uniprot ID:ANR29_HUMAN; ENSEMBL ID: ENSG00000154065; HGNC ID: 27110
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

No data

Location(AA)	Modification	Resource
120	Phosphoserine(ATM)	HMM predict
242	N-linked	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
H3K4me3	colorectal	cancer	19497150	19497368	218	413
NRSF	Jurkat	GSE13047	19498696	19499084	388	2044
NRSF	mAb	Jurkat	19497150	19497575	425	516
NRSF	mAb	Jurkat	19498852	19499896	1044	2528
NRSF-mono	Jurkat	QuESTdata	19498695	19499083	388	2043
NRSF-poly	Jurkat	QuESTdata	19498710	19499126	416	2072
Nanog	ES	GSE20650	19502614	19503082	468	6002
hScc1	Bcell	GSE12603	19499082	19499426	344	2408

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	19456171	19456477	306
CTCF	CD4	SISSRdata	19456171	19456477	306
CTCF	Jurkat	GSE12889	19456170	19456533	363
CTCF	G2	GSE9613	19456004	19456492	488
CTCF	G2	GSE9613	19496264	19496777	513
ER	Breast-Cancer	GSE22609	19438078	19438503	425
ER	Breast-Cancer	GSE22609	19478986	19479281	295
ER	MCF7	GSE19013	19438019	19438521	502
ER	MCF7	GSE19013	19461152	19461768	616
ER	MCF7	GSE19013	19463190	19464000	810
FOXA1	MCF7	GSE15244	19463245	19463942	697
FOXA1	eGFP	GSE10845	19463245	19463942	697
FoxA1	MCF7	MACSdata	19461290	19461625	335
FoxA1	MCF7	MACSdata	19463278	19464006	728
H3K27me3	colorectal	cancer	19494800	19495228	428
H3K27me3	colorectal	cancer	19495698	19496223	525
H3K4me2	HCT116	GSE10453	19495698	19495857	159
Myc	K562	GSE19551	19456239	19456591	352
Myc	hES	GSE17917	19446382	19446603	221
Nanog	hES	GSE18292	19494114	19494529	415
Oct1	H2O2-Hela	GSE14283	19476344	19476382	38
Oct1	Hela	GSE14283	19476344	19476382	38
Oct1	Hela	GSE14283	19492278	19492320	42
P300	T30-glioblastoma	GSE21026	19460412	19461984	1572
RARA	MCF7	GSE15244	19463245	19463942	697
hScc1	Bcell	GSE12603	19452923	19453691	768
hScc1	Bcell	GSE12603	19454718	19454932	214
hScc1	Bcell	GSE12603	19456238	19456492	254
hScc1	Bcell	GSE12603	19496384	19496777	393
hScc1	CdLS	GSE12603	19456039	19456492	453

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-1	hsa-mir-1-2	18	15685193
hsa-miR-1	hsa-mir-1-1	20	15685193
hsa-miR-124	hsa-mir-124-1	8	15685193
hsa-miR-124	hsa-mir-124-2	8	15685193
hsa-miR-124	hsa-mir-124-3	20	15685193
hsa-miR-373	hsa-mir-373	19	15685193
hsa-miR-373*	hsa-mir-373	19	15685193

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
137	Unknown	MicroArray	miR-1	ANKRD29	n_a	15685193
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000154065		"cardiac and skeletal muscles, cardiogenesis"	n_a	n_a	"lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018