AutismKB 2.0

Annotation Detail for LYPD4


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Basic Information Top
Gene Symbol:LYPD4 ( MGC42718,SMR )
Gene Full Name: LY6/PLAUR domain containing 4
Band: 19q13.2
Quick LinksEntrez ID:147719; OMIM: NA; Uniprot ID:LYPD4_HUMAN; ENSEMBL ID: ENSG00000183103; HGNC ID: 28659
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
117N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
117N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
225GPI-anchor amidated alanine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
20Phosphothreonine(PKC)HMM predict
87Phosphoserine(CK1)HMM predict
87Phosphoserine(PKA)HMM predict
97Phosphoserine(MAPK)HMM predict
117N-linkedHMM predict
120N-linkedHMM predict
134O-linkedHMM predict
134Phosphoserine(IKK)HMM predict
137O-linkedHMM predict
137O-linkedHMM predict
139O-linkedHMM predict
141O-linkedHMM predict
183N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_173506
  • Location:chr19 47032989-47040347
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 47032188 47032411 223 690
CTCF CD4GSE12889 47031879 47032155 276 973
CTCF CD4SISSRdata 47031879 47032155 276 973
Oct1 H2O2-HelaGSE14283 47029373 47029443 70 3582
Oct1 HelaGSE14283 47029354 47029448 94 3589
P300 T0-glioblastomaGSE21026 47032055 47032746 691 589
P300 T30-glioblastomaGSE21026 47031955 47032631 676 697
TAF k562GSE8489 47026215 47027059 844 6353
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 47037778 47037805 27 0
Oct1 HelaGSE14283 47034291 47034322 31 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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