Annotation Detail for RC3H1
Basic Information Top
| Gene Symbol: | RC3H1 ( KIAA2025,RNF198,ROQUIN ) |
|---|---|
| Gene Full Name: | ring finger and CCCH-type domains 1 |
| Band: | 1q25.1 |
| Quick Links | Entrez ID:149041; OMIM: 609424; Uniprot ID:RC3H1_HUMAN; ENSEMBL ID: ENSG00000135870; HGNC ID: 29434 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 530 | Phosphoserine. | |
| 535 | Phosphoserine. | |
| 1110 | Phosphoserine (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 1110 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 41 | S-palmitoyl | HMM predict |
| 96 | Phosphotyrosine(Syk) | HMM predict |
| 122 | N-linked | HMM predict |
| 326 | Phosphothreonine(MAPK) | HMM predict |
| 386 | Phosphothreonine(PKC) | HMM predict |
| 412 | Phosphoserine(PKA) | HMM predict |
| 416 | Phosphothreonine(PKC) | HMM predict |
| 417 | Phosphotyrosine(INSR) | HMM predict |
| 433 | Phosphoserine(PKB) | HMM predict |
| 439 | Phosphoserine(ATM) | HMM predict |
| 518 | Phosphoserine(CDC2) | HMM predict |
| 535 | Phosphoserine(IKK) | HMM predict |
| 546 | Phosphoserine(IKK) | HMM predict |
| 593 | Sulfotyrosine | HMM predict |
| 597 | Methylarginine | HMM predict |
| 608 | Phosphotyrosine(Abl) | HMM predict |
| 630 | O-linked | HMM predict |
| 642 | Sulfotyrosine | HMM predict |
| 738 | Phosphotyrosine(SRC) | HMM predict |
| 739 | O-linked | HMM predict |
| 772 | Phosphoserine(MAPK) | HMM predict |
| 779 | Phosphoserine(CDC2) | HMM predict |
| 779 | Phosphoserine(CDK) | HMM predict |
| 779 | O-linked | HMM predict |
| 807 | Phosphotyrosine(INSR) | HMM predict |
| 808 | Phosphoserine(ATM) | HMM predict |
| 824 | Phosphothreonine(PKC) | HMM predict |
| 910 | N-linked | HMM predict |
| 926 | Phosphoserine(CDC2) | HMM predict |
| 926 | O-linked | HMM predict |
| 929 | Phosphoserine(IKK) | HMM predict |
| 936 | Phosphoserine(ATM) | HMM predict |
| 1006 | O-linked | HMM predict |
| 1006 | Phosphoserine(ATM) | HMM predict |
| 1026 | Phosphoserine(CK1) | HMM predict |
| 1058 | N-linked | HMM predict |
| 1059 | Phosphothreonine(CK2) | HMM predict |
| 1088 | N-linked | HMM predict |
| 1102 | N-linked | HMM predict |
| 1108 | N-linked | HMM predict |
| 1120 | N-linked | HMM predict |
| 1122 | Phosphoserine(ATM) | HMM predict |
| 1128 | Phosphothreonine(MAPK) | HMM predict |
- RefSeq ID: NM_172071
- Location:chr1 172172539-172228832
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Rb | Growing | GSE19898 | 172238621 | 172238868 | 247 | 9912 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | ES | GSE20650 | 172170231 | 172170671 | 440 | 2089 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ER | E2-MCF7 | GSE14664 | 172211937 | 172212028 | 91 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 172226485 | 172226526 | 41 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 172200452 | 172200482 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 172191289 | 172191353 | 64 | 0 |
| Oct1 | Hela | GSE14283 | 172200440 | 172200482 | 42 | 0 |
| Oct1 | Hela | GSE14283 | 172204572 | 172204603 | 31 | 0 |
| Oct1 | Hela | GSE14283 | 172214647 | 172214693 | 46 | 0 |
| Oct1 | Hela | GSE14283 | 172226477 | 172226537 | 60 | 0 |
| p63 | keratinocytes | GSE17611 | 172182051 | 172182752 | 701 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-101 | hsa-mir-101-1 | 1 | 20412057 |
| hsa-miR-101 | hsa-mir-101-2 | 9 | 20412057 |
| hsa-miR-146a | hsa-mir-146a | 5 | 19995741 |
| hsa-miR-146a* | hsa-mir-146a | 5 | 19995741 |
| hsa-miR-17 | hsa-mir-17 | 13 | 19995741 |
| hsa-miR-17* | hsa-mir-17 | 13 | 19995741 |
| hsa-miR-181a | hsa-mir-181a-2 | 9 | 19811318 |
| hsa-miR-181a | hsa-mir-181a-1 | 1 | 19811318 |
| hsa-miR-181a* | hsa-mir-181a-1 | 1 | 19811318 |
| hsa-miR-181a-2* | hsa-mir-181a-2 | 9 | 19811318 |
| hsa-miR-181b | hsa-mir-181b-1 | 1 | 19811318 |
| hsa-miR-181b | hsa-mir-181b-2 | 9 | 19811318 |
| hsa-miR-181c | hsa-mir-181c | 19 | 19811318 |
| hsa-miR-181c* | hsa-mir-181c | 19 | 19811318 |
| hsa-miR-181d | hsa-mir-181d | 19 | 19811318 |
| hsa-miR-186 | hsa-mir-186 | 1 | 19811318 |
| hsa-miR-186* | hsa-mir-186 | 1 | 19811318 |
| hsa-miR-590-3p | hsa-mir-590 | 7 | 19811318 |
| hsa-miR-92a | hsa-mir-92a-1 | 13 | 19995741 |
| hsa-miR-92a | hsa-mir-92a-2 | X | 19995741 |
| No data |
Cis-Nats regulation