AutismKB 2.0

Annotation Detail for RNF38


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Basic Information Top
Gene Symbol:RNF38 ( FLJ21343 )
Gene Full Name: ring finger protein 38
Band: 9p13.2
Quick LinksEntrez ID:152006; OMIM: 612488; Uniprot ID:RNF38_HUMAN; ENSEMBL ID: ENSG00000137075; HGNC ID: 18052
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
6Phosphoserine(CDC2)HMM predict
40N-linkedHMM predict
58Phosphoserine(ATM)HMM predict
58Phosphoserine(CDC2)HMM predict
60Phosphoserine(CDC2)HMM predict
60Phosphoserine(CK1)HMM predict
67Phosphoserine(PKG)HMM predict
74O-linkedHMM predict
75O-linkedHMM predict
77PhosphoserineHMM predict
77Phosphoserine(CDK)HMM predict
77O-linkedHMM predict
77Phosphoserine(CDC2)HMM predict
81O-linkedHMM predict
97O-linkedHMM predict
101Phosphoserine(ATM)HMM predict
137Phosphoserine(IKK)HMM predict
137Phosphoserine(PKG)HMM predict
139Phosphoserine(ATM)HMM predict
139Phosphoserine(CK2)HMM predict
199O-linkedHMM predict
203O-linkedHMM predict
303Phosphoserine(CDC2)HMM predict
368Phosphothreonine(PKA)HMM predict
368Phosphothreonine(PKC)HMM predict
375Phosphoserine(ATM)HMM predict
497N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_022781
  • Location:chr9 36326400-36390295
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 36318787 36319228 441 7393
CTCF CD4SISSRdata 36318787 36319228 441 7393
Nanog hESGSE18292 36318919 36319088 169 7397
Oct1 H2O2-HelaGSE14283 36310890 36310918 28 15497
RARA MCF7GSE15244 36307711 36308358 647 18366
TAF k562GSE8489 36317347 36317979 632 8738
hScc1 CdLSGSE12603 36318750 36319253 503 7399
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 36389781 36390289 508 0
TAF k562GSE8489 36387706 36388909 1203 0
TAF k562GSE8489 36389672 36390318 646 0
p130 QuiescentGSE19898 36347578 36347728 150 0
p63 keratinocytesGSE17611 36326843 36327511 668 0
Validated miRNA targets Top
Cis-Nats regulation Top

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Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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