AutismKB 2.0

Annotation Detail for CCDC13


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Basic Information Top
Gene Symbol:CCDC13 ( FLJ25467 )
Gene Full Name: coiled-coil domain containing 13
Band: 3p22.1
Quick LinksEntrez ID:152206; OMIM: NA; Uniprot ID:CCD13_HUMAN; ENSEMBL ID: ENSG00000181061; HGNC ID: 26358
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
7Phosphoserine(CK1)HMM predict
7Phosphoserine(ATM)HMM predict
39Phosphoserine(CK1)HMM predict
288Phosphoserine(ATM)HMM predict
295O-linkedHMM predict
308Phosphoserine(PKG)HMM predict
308Phosphoserine(PKA)HMM predict
428Phosphoserine(IKK)HMM predict
428Phosphoserine(CK1)HMM predict
489Phosphoserine(CDC2)HMM predict
505Phosphoserine(IKK)HMM predict
519Phosphothreonine(PKC)HMM predict
522O-linkedHMM predict
525Phosphoserine(CDC2)HMM predict
525Phosphoserine(CDK)HMM predict
530Phosphoserine(CDC2)HMM predict
530O-linkedHMM predict
536Phosphoserine(CDC2)HMM predict
579Phosphoserine(CK1)HMM predict
615Phosphoserine(ATM)HMM predict
615Phosphoserine(PKC)HMM predict
634N-linkedHMM predict
714LysineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_144719
  • Location:chr3 42724885-42789747
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb GrowingGSE19898 42789693 42789926 233 62
Rb SenescentGSE19898 42789656 42790029 373 95
p130 QuiescentGSE19898 42789653 42790025 372 92
p130 SenescentGSE19898 42789580 42790075 495 80
p130 shRbSenescentGSE19898 42789546 42789972 426 12
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 42721953 42722183 230 2818
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 42760862 42761062 200 0
CTCF CD4SISSRdata 42760862 42761062 200 0
CTCF JurkatGSE12889 42760836 42761022 186 0
CTCF JurkatGSE12889 42772194 42772474 280 0
CTCF G2GSE9613 42725342 42725701 359 0
CTCF G2GSE9613 42728172 42728444 272 0
CTCF G2GSE9613 42748387 42748926 539 0
CTCF G2GSE9613 42749338 42749694 356 0
CTCF G2GSE9613 42750665 42750976 311 0
CTCF G2GSE9613 42751823 42752274 451 0
CTCF G2GSE9613 42756412 42756728 316 0
CTCF G2GSE9613 42760511 42760991 480 0
CTCF G2GSE9613 42763497 42763784 287 0
CTCF G2GSE9613 42764169 42764378 209 0
CTCF G2GSE9613 42764899 42765147 248 0
CTCF G2GSE9613 42766470 42766835 365 0
CTCF G2GSE9613 42767280 42767557 277 0
CTCF G2GSE9613 42772324 42772489 165 0
CTCF G2GSE9613 42782558 42782799 241 0
Nanog hESGSE18292 42781363 42781726 363 0
Sox2 hESGSE18292 42781370 42781753 383 0
TFAP2C MCF7GSE21234 42744574 42744888 314 0
hScc1 BcellGSE12603 42748423 42748853 430 0
hScc1 BcellGSE12603 42756376 42756693 317 0
hScc1 BcellGSE12603 42760511 42760991 480 0
hScc1 BcellGSE12603 42766470 42766799 329 0
hScc1 BcellGSE12603 42789585 42789864 279 0
hScc1 CdLSGSE12603 42760618 42760991 373 0
hScc1 G2GSE9613 42760511 42760991 480 0
hScc1 G2GSE9613 42766279 42766928 649 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17977 mRNA LOC348817 chr3 42749073 42763264 237 mRNA CCDC13 chr3 42724885 42789748Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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