AutismKB 2.0

Annotation Detail for CNTN4


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Basic Information Top
Gene Symbol:CNTN4 ( AXCAM,BIG-2,CNTN4A,MGC33615 )
Gene Full Name: contactin 4
Band: 3p26.3-p26.2
Quick LinksEntrez ID:152330; OMIM: 607280; Uniprot ID:CNTN4_HUMAN; ENSEMBL ID: ENSG00000144619; HGNC ID: 2174
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
65N-linked (GlcNAc...).
90N-linked (GlcNAc...) (Potential).
191N-linked (GlcNAc...) (Potential).
370N-linked (GlcNAc...) (Potential).
375N-linked (GlcNAc...) (Potential).
466N-linked (GlcNAc...) (Potential).
705N-linked (GlcNAc...) (Potential).
764N-linked (GlcNAc...) (Potential).
858N-linked (GlcNAc...) (Potential).
893N-linked (GlcNAc...) (Potential).
911N-linked (GlcNAc...) (Potential).
929N-linked (GlcNAc...) (Potential).
954N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
65N-linked (GlcNAc...).Swiss-Prot 53.0
90N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
191N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
370N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
375N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
466N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
705N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
764N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
858N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
893N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
911N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
929N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
954N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
1000GPI-anchor amidated serine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
65N-linkedHMM predict
77Phosphotyrosine(Jak)HMM predict
90N-linkedHMM predict
101O-linkedHMM predict
103O-linkedHMM predict
130Phosphoserine(PKB)HMM predict
131Phosphothreonine(PKA)HMM predict
173Phosphoserine(PKG)HMM predict
191N-linkedHMM predict
346Phosphothreonine(PKC)HMM predict
347Phosphotyrosine(SRC)HMM predict
358Phosphothreonine(PKC)HMM predict
370N-linkedHMM predict
375N-linkedHMM predict
417Phosphothreonine(PKA)HMM predict
434Phosphoserine(CDC2)HMM predict
466N-linkedHMM predict
475Phosphotyrosine(INSR)HMM predict
574Phosphotyrosine(INSR)HMM predict
574Phosphotyrosine(Jak)HMM predict
623N-linkedHMM predict
647Phosphothreonine(PKC)HMM predict
694Phosphothreonine(PKC)HMM predict
694Phosphothreonine(PKA)HMM predict
764N-linkedHMM predict
789Phosphoserine(CDC2)HMM predict
791O-linkedHMM predict
858N-linkedHMM predict
888O-linkedHMM predict
889O-linkedHMM predict
893N-linkedHMM predict
895O-linkedHMM predict
896O-linkedHMM predict
902Phosphoserine(ATM)HMM predict
902O-linkedHMM predict
911N-linkedHMM predict
929N-linkedHMM predict
947Phosphoserine(PKA)HMM predict
949Phosphoserine(CK1)HMM predict
954N-linkedHMM predict
968SulfotyrosineHMM predict
982Phosphoserine(CK2)HMM predict
1000O-linkedHMM predict
1003O-linkedHMM predict
1005O-linkedHMM predict
1008S-farnesylHMM predict
1009ThreonineHMM predict
1009O-linkedHMM predict
1015O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_175607
  • Location:chr3 2117246-3074643
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 2114930 2116331 1401 1616
hScc1 BcellGSE12603 2114819 2116080 1261 1797
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 2172919 2173286 367 0
FOXA1 MCF7GSE15244 2173067 2173467 400 0
Myc hESGSE17917 2679043 2679360 317 0
NRSF JurkatGSE13047 2319890 2320865 975 0
NRSF JurkatGSE13047 2827114 2827891 777 0
NRSF mAbJurkat 2168648 2170053 1405 0
NRSF mAbJurkat 2318037 2318788 751 0
NRSF mAbJurkat 2319136 2319659 523 0
NRSF mAbJurkat 2320292 2322074 1782 0
NRSF mAbJurkat 2822888 2827786 4898 0
NRSF mAbJurkat 2828967 2831650 2683 0
NRSF-mono JurkatQuESTdata 2168033 2168265 232 0
NRSF-mono JurkatQuESTdata 2320027 2320853 826 0
NRSF-mono JurkatQuESTdata 2827369 2827884 515 0
NRSF-poly JurkatQuESTdata 2167933 2168295 362 0
NRSF-poly JurkatQuESTdata 2320023 2320856 833 0
NRSF-poly JurkatQuESTdata 2827220 2827820 600 0
Nanog ESGSE20650 2294057 2294655 598 0
Nanog ESGSE20650 2437661 2438003 342 0
Nanog ESGSE20650 2528001 2528418 417 0
Nanog hESGSE18292 2183335 2183595 260 0
Nanog hESGSE18292 2380953 2381341 388 0
Nanog hESGSE18292 2437671 2437971 300 0
Nanog hESGSE18292 2800088 2800520 432 0
Nanog hESGSE18292 2827562 2827732 170 0
Oct4 ESGSE20650 2437640 2437973 333 0
RARA MCF7GSE15244 2781408 2782074 666 0
RARG MCF7GSE15244 2781338 2782048 710 0
Rb GrowingGSE19898 2736491 2736679 188 0
Rb GrowingGSE19898 2843385 2843554 169 0
STAT1 IFNSISSRdata 2372721 2373238 517 0
TAF k562GSE8489 2158829 2159011 182 0
hScc1 BcellGSE12603 2172919 2173286 367 0
hScc1 CdLSGSE12603 2172877 2173467 590 0
hScc1 CdLSGSE12603 2891247 2891473 226 0
hScc1 G2GSE9613 2172877 2173467 590 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17712 mRNA CNTN4 chr3 3056307 3074645 631 EST chr3 3056344 3077829Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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