AutismKB 2.0

Annotation Detail for CX3CR1


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Basic Information Top
Gene Symbol:CX3CR1 ( CCRL1,CMKBRL1,CMKDR1,GPR13,GPRV28,V28 )
Gene Full Name: chemokine (C-X3-C motif) receptor 1
Band: 3p22.2
Quick LinksEntrez ID:1524; OMIM: 601470; Uniprot ID:CX3C1_HUMAN; ENSEMBL ID: ENSG00000168329; HGNC ID: 2558
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
14SulfotyrosineHMM predict
128Phosphotyrosine(Jak)HMM predict
140N-linkedHMM predict
286S-palmitoylHMM predict
287S-palmitoylHMM predict
325Phosphoserine(CK1)HMM predict
326Phosphoserine(CK1)HMM predict
329Phosphoserine(ATM)HMM predict
336Phosphoserine(IKK)HMM predict
336Phosphoserine(PKA)HMM predict
341N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001337
  • Location:chr3 39279989-39296530
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 39304810 39305170 360 8460
CTCF CD4GSE12889 39308302 39308630 328 11936
CTCF CD4SISSRdata 39304810 39305170 360 8460
CTCF CD4SISSRdata 39308302 39308630 328 11936
CTCF G2GSE9613 39304555 39305256 701 8375
CTCF G2GSE9613 39308318 39308934 616 12096
CTCF G2GSE9613 39311404 39311681 277 15012
FOXA1 MCF7GSE15244 39303646 39304009 363 7297
NFkBII GM12878GSE19485 39311036 39313442 2406 15709
NFkBII GM12892GSE19485 39311034 39313278 2244 15626
Oct4 hESGSE17917 39304796 39305235 439 8485
Rb GrowingGSE19898 39297915 39298083 168 1469
TAFII hESGSE17917 39304852 39305231 379 8511
VDR GM10855-stimGSE22484 39298711 39299993 1282 2822
hScc1 BcellGSE12603 39297173 39297828 655 970
hScc1 BcellGSE12603 39304435 39305256 821 8315
hScc1 BcellGSE12603 39308318 39308934 616 12096
hScc1 CdLSGSE12603 39304435 39305256 821 8315
hScc1 CdLSGSE12603 39308318 39308867 549 12062
hScc1 CdLSGSE12603 39310055 39310237 182 13616
hScc1 G2GSE9613 39304435 39305256 821 8315
hScc1 G2GSE9613 39308318 39308867 549 12062
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 39269002 39269423 421 10777
CTCF G2GSE9613 39270204 39270626 422 9575
Rb GrowingGSE19898 39279558 39279683 125 369
hScc1 CdLSGSE12603 39277470 39277920 450 2295
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 39292617 39292801 184 0
hScc1 CdLSGSE12603 39286559 39286818 259 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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