Annotation Detail for C5orf41

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Basic Information Top

Gene Symbol:	C5orf41 ( DKFZp313F2319,DKFZp686G2059,LRF )
Gene Full Name:	chromosome 5 open reading frame 41
Band:	5q35.1
Quick Links	Entrez ID:153222; OMIM: NA; Uniprot ID:CE041_HUMAN; ENSEMBL ID: ENSG00000164463; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
444	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_153607
Location:chr5 172415975-172496566
strand:+

Upstream the gene:8 results
Downstream the gene:0 results
Inside the gene:12 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FoxA1	MCF7	MACSdata	172405193	172405473	280	10643
H3K4me2	HCT116	GSE10453	172415302	172415551	249	549
H3ac	HepG2	E	172413707	172415696	1989	1274
TFAP2C	MCF7	GSE21234	172405009	172405605	596	10669
USF1	HepG2	E	172413599	172415957	2358	1198
USF2	HepG2	E	172413963	172415882	1919	1053
p130	Quiescent	GSE19898	172415496	172415735	239	360
p130	shRbSenescent	GSE19898	172415497	172416164	667	145

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	172415821	172416652	831	0
ETS1	Jurkat	GSE17954	172415209	172417603	2394	0
Fos	K562	GSE19551	172416567	172417636	1069	0
FoxA1	MCF7	MACSdata	172453604	172453941	337	0
PHF8	293T	GSE20725	172416405	172417573	1168	0
Rb	Quiescent	GSE19898	172417044	172417378	334	0
Rb	Senescent	GSE19898	172416952	172417289	337	0
STAT1	HeLa	GSE12782	172414643	172418049	3406	0
TAF	Hela	GSE8489	172419284	172419780	496	0
hScc1	Bcell	GSE12603	172415302	172416708	1406	0
hScc1	CdLS	GSE12603	172415375	172416810	1435	0
p130	shRbQuiescent	GSE19898	172416741	172417388	647	0

Validated miRNA targets

miR Walk:4 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-28-3p	hsa-mir-28	3	20923760
hsa-miR-28-5p	hsa-mir-28	3	20923760
hsa-miR-505	hsa-mir-505	X	20923760
hsa-miR-505*	hsa-mir-505	X	20923760

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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