AutismKB 2.0

Annotation Detail for ABCA13


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Basic Information Top
Gene Symbol:ABCA13 ( DKFZp313D2411,FLJ16398,FLJ33876,FLJ33951 )
Gene Full Name: ATP-binding cassette, sub-family A (ABC1), member 13
Band: 7p12.3
Quick LinksEntrez ID:154664; OMIM: 607807; Uniprot ID:ABCAD_HUMAN; ENSEMBL ID: ENSG00000179869; HGNC ID: 14638
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
84N-linkedHMM predict
145Phosphothreonine(MAPK)HMM predict
160N-linkedHMM predict
225N-linkedHMM predict
229Phosphoserine(ATM)HMM predict
237N-linkedHMM predict
316Phosphoserine(CK2)HMM predict
318Phosphoserine(CK1)HMM predict
318Phosphoserine(CK2)HMM predict
341Phosphotyrosine(Jak)HMM predict
404N-linkedHMM predict
415N-linkedHMM predict
521N-linkedHMM predict
536N-linkedHMM predict
541Phosphoserine(CK1)HMM predict
656Phosphotyrosine(INSR)HMM predict
700Phosphoserine(CDC2)HMM predict
710N-linkedHMM predict
759Phosphoserine(IKK)HMM predict
762Phosphoserine(CK1)HMM predict
769N-linkedHMM predict
788O-linkedHMM predict
858N-linkedHMM predict
864N-linkedHMM predict
884Phosphoserine(CDC2)HMM predict
967Phosphoserine(CDK)HMM predict
1026N-linkedHMM predict
1049Phosphoserine(CK1)HMM predict
1088N-linkedHMM predict
1111N-linkedHMM predict
1215N-linkedHMM predict
1217Phosphothreonine(PKA)HMM predict
1220N-linkedHMM predict
1273N-linkedHMM predict
1293Phosphoserine(CK2)HMM predict
1312N-linkedHMM predict
1315N-linkedHMM predict
1336N-linkedHMM predict
1352N-linkedHMM predict
1379N-linkedHMM predict
1383Phosphoserine(CK1)HMM predict
1409N-linkedHMM predict
1452N-linkedHMM predict
1457N-linkedHMM predict
1506N-linkedHMM predict
1568N-linkedHMM predict
1569N-linkedHMM predict
1571Phosphoserine(CK1)HMM predict
1572Phosphoserine(CK1)HMM predict
1664Phosphothreonine(PKA)HMM predict
1665Phosphoserine(PKA)HMM predict
1695N-linkedHMM predict
1785N-linkedHMM predict
1826N-linkedHMM predict
1829N-linkedHMM predict
1871Phosphoserine(IKK)HMM predict
1931Phosphoserine(IKK)HMM predict
1933N-linkedHMM predict
1963N-linkedHMM predict
2014Phosphoserine(IKK)HMM predict
2033N-linkedHMM predict
2038O-linkedHMM predict
2051Phosphothreonine(MAPK)HMM predict
2053Phosphotyrosine(SRC)HMM predict
2112Phosphoserine(CK1)HMM predict
2138Phosphotyrosine(INSR)HMM predict
2138SulfotyrosineHMM predict
2151N-linkedHMM predict
2154Phosphoserine(CK2)HMM predict
2174N-linkedHMM predict
2180N-linkedHMM predict
2228N-linkedHMM predict
2250Phosphoserine(CK1)HMM predict
2337Phosphotyrosine(INSR)HMM predict
2337Phosphotyrosine(SRC)HMM predict
2377N-linkedHMM predict
2381N-linkedHMM predict
2382N-linkedHMM predict
2452N-linkedHMM predict
2461N-linkedHMM predict
2462N-linkedHMM predict
2486Phosphoserine(CK2)HMM predict
2575Phosphothreonine(PKC)HMM predict
2661N-linkedHMM predict
2686N-linkedHMM predict
2689N-linkedHMM predict
2703Phosphoserine(IKK)HMM predict
2725Phosphoserine(ATM)HMM predict
2727N-linkedHMM predict
2794N-linkedHMM predict
2804Phosphoserine(ATM)HMM predict
2806N-linkedHMM predict
2833N-linkedHMM predict
2834N-linkedHMM predict
2860N-linkedHMM predict
2869Phosphothreonine(CK2)HMM predict
2947N-linkedHMM predict
3005N-linkedHMM predict
3019N-linkedHMM predict
3027Phosphoserine(CK1)HMM predict
3061N-linkedHMM predict
3076N-linkedHMM predict
3086Phosphoserine(CK1)HMM predict
3092N-linkedHMM predict
3102N-linkedHMM predict
3241Phosphoserine(CDK)HMM predict
3255Phosphoserine(IKK)HMM predict
3335N-linkedHMM predict
3346Phosphothreonine(PKC)HMM predict
3426N-linkedHMM predict
3457Phosphoserine(IKK)HMM predict
3551Phosphothreonine(PKC)HMM predict
3707N-linkedHMM predict
3929N-linkedHMM predict
3957N-linkedHMM predict
3973Phosphothreonine(PKA)HMM predict
3985Phosphoserine(PKG)HMM predict
4055S-palmitoylHMM predict
4078Phosphoserine(PKC)HMM predict
4110Phosphoserine(CK1)HMM predict
4182Phosphothreonine(PKA)HMM predict
4219Phosphothreonine(PKA)HMM predict
4304N-linkedHMM predict
4324S-palmitoylHMM predict
4329N-linkedHMM predict
4347N-linkedHMM predict
4352N-linkedHMM predict
4385N-linkedHMM predict
4391Phosphothreonine(PKC)HMM predict
4439Phosphotyrosine(Jak)HMM predict
4562Phosphoserine(CK1)HMM predict
4563Phosphoserine(CDK)HMM predict
4605Phosphotyrosine(Syk)HMM predict
4647Phosphoserine(CDC2)HMM predict
4699Phosphothreonine(CK2)HMM predict
4722N-linkedHMM predict
4821Phosphotyrosine(Jak)HMM predict
4866Phosphoserine(PKA)HMM predict
4866Phosphoserine(PKG)HMM predict
4890S-palmitoylHMM predict
4939Phosphoserine(CDC2)HMM predict
5009N-linkedHMM predict
5014N-linkedHMM predict
5021N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152701
  • Location:chr7 48208388-48657636
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 48309680 48310050 370 0
CTCF G2GSE9613 48331746 48332022 276 0
CTCF G2GSE9613 48359625 48360069 444 0
CTCF G2GSE9613 48434943 48435232 289 0
CTCF G2GSE9613 48464975 48465333 358 0
CTCF G2GSE9613 48630821 48631071 250 0
Fos K562GSE19551 48642776 48643047 271 0
Myc K562GSE19551 48642809 48643019 210 0
NRSF JurkatGSE13047 48305735 48306107 372 0
NRSF JurkatSISSRdata 48305869 48306038 169 0
NRSF-mono JurkatQuESTdata 48305734 48306106 372 0
Nanog ESGSE20650 48444145 48444568 423 0
Nanog ESGSE20650 48604611 48604942 331 0
Nanog ESGSE20650 48642893 48643005 112 0
Nanog hESGSE18292 48444287 48444510 223 0
Oct1 H2O2-HelaGSE14283 48293777 48293814 37 0
Oct1 H2O2-HelaGSE14283 48340015 48340065 50 0
Oct1 H2O2-HelaGSE14283 48498209 48498242 33 0
Oct1 HelaGSE14283 48293777 48293812 35 0
Oct1 HelaGSE14283 48340014 48340060 46 0
Oct1 HelaGSE14283 48498209 48498259 50 0
Oct1 HelaGSE14283 48522968 48523018 50 0
Oct1 HelaGSE14283 48603407 48603443 36 0
Oct1 HelaGSE14283 48644909 48644945 36 0
Oct4 ESGSE20650 48473779 48474144 365 0
Oct4 ESGSE20650 48642903 48642992 89 0
P300 T30-glioblastomaGSE21026 48399835 48400838 1003 0
P300 T30-glioblastomaGSE21026 48436827 48438221 1394 0
P300 T30-glioblastomaGSE21026 48448057 48449025 968 0
P300 T30-glioblastomaGSE21026 48647318 48648673 1355 0
Pol3 K562GSE19551 48642784 48643076 292 0
TAF HelaGSE8489 48302373 48302818 445 0
TAF k562GSE8489 48373711 48373985 274 0
TFAP2C MCF7GSE21234 48320985 48321447 462 0
TFAP2C MCF7GSE21234 48469155 48469615 460 0
hScc1 BcellGSE12603 48309756 48310157 401 0
hScc1 BcellGSE12603 48435052 48435232 180 0
hScc1 CdLSGSE12603 48309650 48310192 542 0
hScc1 CdLSGSE12603 48434829 48435409 580 0
hScc1 G2GSE9613 48309650 48310263 613 0
hScc1 G2GSE9613 48434870 48435409 539 0
p63 keratinocytesGSE17611 48290032 48290877 845 0
p63 keratinocytesGSE17611 48530803 48531639 836 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
23981 mRNA ABCA13 chr7 48015103 48464352 250 mRNA chr7 48269049 48272485Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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