AutismKB 2.0

Annotation Detail for RDH10


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Basic Information Top
Gene Symbol:RDH10 ( SDR16C4 )
Gene Full Name: retinol dehydrogenase 10 (all-trans)
Band: 8q21.11
Quick LinksEntrez ID:157506; OMIM: 607599; Uniprot ID:RDH10_HUMAN; ENSEMBL ID: ENSG00000121039; HGNC ID: 19975
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_172037
  • Location:chr8 74369890-74399344
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 74369063 74370384 1321 167
PHF8 293TGSE20725 74368624 74369937 1313 610
PHF8 HeLaGSE20725 74368719 74370546 1827 258
PolII HeLaGSE12783 74367470 74371103 3633 604
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 74401651 74402098 447 2530
CTCF G2GSE9613 74402999 74403237 238 3774
ER E2-MCF7GSE14664 74400652 74400698 46 1331
FOXA1 MCF7GSE15244 74405137 74405828 691 6138
Oct1 HelaGSE14283 74400654 74400693 39 1329
RARA MCF7GSE15244 74405173 74405828 655 6156
RARG MCF7GSE15244 74405137 74405930 793 6189
RNAII Tamoxifen-MCF7GSE14664 74400645 74400688 43 1322
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 74380295 74380540 245 0
ER MCF7GSE19013 74388745 74389343 598 0
FOXA1 MCF7GSE15244 74387205 74387606 401 0
H3K4me3 colorectalcancer 74370417 74371045 628 0
H3ac HepG2E 74370493 74370904 411 0
H3ac HepG2E 74371243 74372311 1068 0
Nanog hESGSE18292 74387105 74387653 548 0
RARA MCF7GSE15244 74388575 74389390 815 0
RARG MCF7GSE15244 74388719 74389245 526 0
RNAII Tamoxifen-MCF7GSE14664 74382243 74382292 49 0
STAT1 HeLaGSE12783 74386773 74387785 1012 0
TFAP2C MCF7GSE21234 74390278 74390582 304 0
USF1 HepG2E 74388498 74390104 1606 0
hScc1 BcellGSE12603 74380295 74380642 347 0
hScc1 CdLSGSE12603 74380259 74380858 599 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-124 hsa-mir-124-1 8 17724173
hsa-miR-124 hsa-mir-124-2 8 17724173
hsa-miR-124 hsa-mir-124-3 20 17724173
hsa-miR-135a hsa-mir-135a-1 3 17724173
hsa-miR-135a hsa-mir-135a-2 12 17724173
hsa-miR-135b hsa-mir-135b 1 17724173
hsa-miR-135b* hsa-mir-135b 1 17724173
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-29a hsa-mir-29a 7 17724173
hsa-miR-29a* hsa-mir-29a 7 17724173
hsa-miR-29b hsa-mir-29b-1 7 17724173
hsa-miR-29b hsa-mir-29b-2 1 17724173
hsa-miR-29b-1* hsa-mir-29b-1 7 17724173
hsa-miR-29b-2* hsa-mir-29b-2 1 17724173
hsa-miR-29c hsa-mir-29c 1 17724173
hsa-miR-29c* hsa-mir-29c 1 17724173
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
hsa-miR-7 hsa-mir-7-1 9 17724173
hsa-miR-7 hsa-mir-7-2 15 17724173
hsa-miR-7 hsa-mir-7-3 19 17724173
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
426 Unknown TRUE miR-124 RDH10 Luciferase assay 17724173
888 Unknown pSILAC let-7b RDH10 down 75-50% 18668040
922 Unknown pSILAC LNA_let-7b RDH10 up 25-50% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000121039 G1-to-S transition n_a n_a "epithelium, lymphocyte, leukocyte, muscle cell" "malignant tumour, carcinoma, sarcoma"
ENSG00000121039 n_a n_a n_a "epithelium, lymphocyte, leukocyte, muscle cell" "malignant tumour, carcinoma, sarcoma"
ENSG00000121039 n_a n_a n_a "epithelium, lymphocyte, leukocyte, muscle cell" "malignant tumour, carcinoma, sarcoma"
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25583 mRNA RDH10 chr8 74369890 74399345 17899 EST chr8 74372499 74390398 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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