AutismKB 2.0

Annotation Detail for VPS13B


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Basic Information Top
Gene Symbol:VPS13B ( CHS1,COH1,DKFZp313I0811,KIAA0532 )
Gene Full Name: vacuolar protein sorting 13 homolog B (yeast)
Band: 8q22.2
Quick LinksEntrez ID:157680; OMIM: 607817; Uniprot ID:VP13B_HUMAN; ENSEMBL ID: ENSG00000132549; HGNC ID: 2183
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
563Phosphoserine.
568Phosphothreonine.
574Phosphothreonine.
999Phosphoserine.
1002Phosphoserine.
2222Phosphoserine.
2235Phosphoserine.
Location(AA) Modifications Resource
999Phosphoserine.Swiss-Prot 53.0
999PhosphoserinePhospho.ELM 6.0
1002Phosphoserine.Swiss-Prot 53.0
1002PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
105Phosphoserine(CK1)HMM predict
105Phosphoserine(IKK)HMM predict
106N-linkedHMM predict
109N-linkedHMM predict
118Phosphoserine(CDC2)HMM predict
118Phosphoserine(CDK)HMM predict
172N-linkedHMM predict
204N-linkedHMM predict
310N-linkedHMM predict
314Phosphoserine(CK2)HMM predict
335Phosphoserine(ATM)HMM predict
359SulfotyrosineHMM predict
382Phosphothreonine(PKC)HMM predict
413Phosphotyrosine(Syk)HMM predict
414Phosphoserine(CDC2)HMM predict
414Phosphoserine(CDK)HMM predict
471N-linkedHMM predict
501Phosphotyrosine(INSR)HMM predict
507N-linkedHMM predict
524Phosphotyrosine(INSR)HMM predict
546N-linkedHMM predict
548O-linkedHMM predict
606Phosphotyrosine(SRC)HMM predict
606Phosphotyrosine(Syk)HMM predict
620N-linkedHMM predict
625N-linkedHMM predict
641Phosphothreonine(PKA)HMM predict
672N-linkedHMM predict
675N-linkedHMM predict
678N-linkedHMM predict
681N-linkedHMM predict
717Phosphoserine(CK1)HMM predict
777S-palmitoylHMM predict
795N-linkedHMM predict
820N-linkedHMM predict
911N-linkedHMM predict
972Phosphothreonine(PKA)HMM predict
1011Phosphotyrosine(EGFR)HMM predict
1019Phosphoserine(CDC2)HMM predict
1019Phosphoserine(CDK)HMM predict
1033Phosphoserine(ATM)HMM predict
1048Phosphoserine(CDC2)HMM predict
1082N-linkedHMM predict
1087Phosphoserine(CDC2)HMM predict
1130Phosphotyrosine(INSR)HMM predict
1130Phosphotyrosine(Abl)HMM predict
1247N-linkedHMM predict
1249Phosphoserine(CDC2)HMM predict
1249Phosphoserine(CDK)HMM predict
1252Phosphoserine(CDC2)HMM predict
1252Phosphoserine(IKK)HMM predict
1255O-linkedHMM predict
1263Phosphoserine(CDC2)HMM predict
1263Phosphoserine(CDK)HMM predict
1263Phosphoserine(IKK)HMM predict
1263PhosphoserineHMM predict
1267O-linkedHMM predict
1268O-linkedHMM predict
1268Phosphoserine(PKG)HMM predict
1271O-linkedHMM predict
1276O-linkedHMM predict
1277O-linkedHMM predict
1277Phosphoserine(IKK)HMM predict
1280Phosphoserine(MAPK)HMM predict
1280Phosphoserine(ATM)HMM predict
1282O-linkedHMM predict
1303Phosphoserine(ATM)HMM predict
1393Phosphoserine(IKK)HMM predict
1426N-linkedHMM predict
1466Phosphothreonine(PKA)HMM predict
1529Phosphoserine(CDC2)HMM predict
1550N-linkedHMM predict
1606Phosphotyrosine(EGFR)HMM predict
1620Phosphoserine(CK2)HMM predict
1652O-linkedHMM predict
1729N-linkedHMM predict
1733N-linkedHMM predict
1753N-linkedHMM predict
1789PhosphoserineHMM predict
1794O-linkedHMM predict
1812Phosphoserine(IKK)HMM predict
1827Phosphoserine(IKK)HMM predict
1851Phosphotyrosine(INSR)HMM predict
1861Phosphoserine(ATM)HMM predict
1861Phosphoserine(IKK)HMM predict
1928O-linkedHMM predict
1946Phosphothreonine(PKA)HMM predict
1968S-palmitoylHMM predict
1989Phosphoserine(PKC)HMM predict
2079Phosphoserine(CK1)HMM predict
2106Phosphoserine(PKG)HMM predict
2208S-palmitoylHMM predict
2209S-palmitoylHMM predict
2285Phosphoserine(CDC2)HMM predict
2290N-linkedHMM predict
2299Phosphoserine(PKA)HMM predict
2328N-linkedHMM predict
2348Phosphothreonine(PKC)HMM predict
2358N-linkedHMM predict
2360O-linkedHMM predict
2397N-linkedHMM predict
2431N-linkedHMM predict
2435N-linkedHMM predict
2442Phosphoserine(CK2)HMM predict
2444Phosphoserine(CK1)HMM predict
2444Phosphoserine(CK2)HMM predict
2446Phosphoserine(IKK)HMM predict
2448Phosphoserine(ATM)HMM predict
2448Phosphoserine(IKK)HMM predict
2450Phosphoserine(IKK)HMM predict
2457O-linkedHMM predict
2457Phosphothreonine(MAPK)HMM predict
2522Phosphotyrosine(INSR)HMM predict
2539N-linkedHMM predict
2561N-linkedHMM predict
2563Phosphothreonine(PKA)HMM predict
2636N-linkedHMM predict
2649Phosphothreonine(CK2)HMM predict
2691Phosphoserine(ATM)HMM predict
2738Phosphoserine(ATM)HMM predict
2774Phosphotyrosine(INSR)HMM predict
2817N-linkedHMM predict
2902Phosphotyrosine(Syk)HMM predict
2902SulfotyrosineHMM predict
2993N-linkedHMM predict
3049N-linkedHMM predict
3065Phosphothreonine(PKC)HMM predict
3113N-linkedHMM predict
3114N-linkedHMM predict
3171Phosphoserine(ATM)HMM predict
3189Phosphoserine(ATM)HMM predict
3197Phosphoserine(ATM)HMM predict
3201Phosphoserine(IKK)HMM predict
3252Phosphoserine(CDK)HMM predict
3252Phosphoserine(ATM)HMM predict
3286Phosphoserine(CK2)HMM predict
3460N-linkedHMM predict
3463N-linkedHMM predict
3612Phosphothreonine(MAPK)HMM predict
3659Phosphoserine(CDC2)HMM predict
3733Phosphotyrosine(Syk)HMM predict
3831Phosphoserine(ATM)HMM predict
3953Phosphotyrosine(SRC)HMM predict
3988O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015243
  • Location:chr8 100094669-100291188
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 100209792 100210000 208 0
ER E2-MCF7GSE14664 100279549 100279582 33 0
Fos K562GSE19551 100219231 100219687 456 0
Gata1 K562GSE18868 100219268 100219613 345 0
Gata2 K562GSE18868 100219276 100219713 437 0
KLF4 hESGSE17917 100268515 100268716 201 0
Myc K562GSE19551 100219338 100219667 329 0
Oct1 H2O2-HelaGSE14283 100213162 100213189 27 0
Oct1 H2O2-HelaGSE14283 100217561 100217610 49 0
Oct1 H2O2-HelaGSE14283 100250720 100250757 37 0
hScc1 CdLSGSE12603 100249528 100249904 376 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25754 mRNA VPS13B chr8 100094669 100958983 103 EST chr8 100952018 100952440Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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