AutismKB 2.0

Annotation Detail for LINGO2


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Basic Information Top
Gene Symbol:LINGO2 ( FLJ31810,LERN3,LRRN6C )
Gene Full Name: leucine rich repeat and Ig domain containing 2
Band: 9p21.2-p21.1
Quick LinksEntrez ID:158038; OMIM: 609793; Uniprot ID:LIGO2_HUMAN; ENSEMBL ID: ENSG00000174482; HGNC ID: 21207
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
38N-linked (GlcNAc...) (Potential).
130N-linked (GlcNAc...) (Potential).
188N-linked (GlcNAc...) (Potential).
279N-linked (GlcNAc...) (Potential).
327N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152570
  • Location:chr9 27938527-28709302
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
p63 keratinocytesGSE17611 28725739 28726666 927 16900
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 27924457 27924488 31 14055
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 28431087 28431292 205 0
CBP T30-glioblastomaGSE21026 28041578 28042064 486 0
CBP T30-glioblastomaGSE21026 28202731 28203531 800 0
CBP T30-glioblastomaGSE21026 28224757 28225386 629 0
ER Fulvestrant-MCF7GSE14664 28042218 28042275 57 0
Nanog ESGSE20650 28307752 28308176 424 0
Nanog hESGSE18292 28063194 28063614 420 0
Nanog hESGSE18292 28278596 28278987 391 0
Nanog hESGSE18292 28425517 28425808 291 0
Nanog hESGSE18292 28677883 28678762 879 0
Oct1 H2O2-HelaGSE14283 28209402 28209430 28 0
Oct1 H2O2-HelaGSE14283 28302588 28302616 28 0
Oct1 H2O2-HelaGSE14283 28450022 28450054 32 0
Oct1 H2O2-HelaGSE14283 28524693 28524727 34 0
Oct1 HelaGSE14283 27941520 27941598 78 0
Oct1 HelaGSE14283 28033478 28033539 61 0
Oct1 HelaGSE14283 28042230 28042283 53 0
Oct1 HelaGSE14283 28063464 28063545 81 0
Oct1 HelaGSE14283 28108941 28108975 34 0
Oct1 HelaGSE14283 28116713 28116755 42 0
Oct1 HelaGSE14283 28138140 28138204 64 0
Oct1 HelaGSE14283 28165278 28165327 49 0
Oct1 HelaGSE14283 28179144 28179212 68 0
Oct1 HelaGSE14283 28209385 28209430 45 0
Oct1 HelaGSE14283 28234650 28234712 62 0
Oct1 HelaGSE14283 28435380 28435410 30 0
Oct1 HelaGSE14283 28441038 28441075 37 0
Oct1 HelaGSE14283 28450022 28450085 63 0
Oct1 HelaGSE14283 28523271 28523304 33 0
Oct1 HelaGSE14283 28524693 28524727 34 0
Oct1 HelaGSE14283 28595002 28595052 50 0
Oct1 HelaGSE14283 28706025 28706094 69 0
P300 T0-glioblastomaGSE21026 28202984 28203544 560 0
P300 T30-glioblastomaGSE21026 28202742 28203645 903 0
P300 T30-glioblastomaGSE21026 28224681 28225541 860 0
SRF HelaGSE8489 27950374 27950531 157 0
Sox2 hESGSE18292 28063236 28063620 384 0
TFAP2C MCF7GSE21234 28117004 28117491 487 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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