AutismKB 2.0

Annotation Detail for USP54


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Basic Information Top
Gene Symbol:USP54 ( C10orf29,FLJ37318,bA137L10.3,bA137L10.4 )
Gene Full Name: ubiquitin specific peptidase 54
Band: 10q22.2
Quick LinksEntrez ID:159195; OMIM: NA; Uniprot ID:UBP54_HUMAN; ENSEMBL ID: ENSG00000166348; HGNC ID: 23513
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
227Phosphoserine (By similarity).
Location(AA) Modifications Resource
Location(AA) Modification Resource
25Phosphothreonine(PKA)HMM predict
26O-linkedHMM predict
26Phosphoserine(IKK)HMM predict
188O-linkedHMM predict
189Phosphoserine(IKK)HMM predict
215N-linkedHMM predict
355Phosphothreonine(CDC2)HMM predict
355Phosphothreonine(MAPK)HMM predict
355Phosphothreonine(CDK)HMM predict
358O-linkedHMM predict
381Phosphoserine(CK1)HMM predict
387Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152586
  • Location:chr10 74928058-74983103
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 74984997 74985031 34 1911
Oct1 HelaGSE14283 74985061 74985089 28 1972
Oct1 HelaGSE14283 74993909 74993961 52 10832
Oct1 HelaGSE14283 74995053 74995085 32 11966
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 74959076 74959414 338 0
CTCF CD4SISSRdata 74959076 74959414 338 0
ER E2-MCF7GSE14664 74945214 74945249 35 0
Fos K562GSE19551 74947042 74947841 799 0
Gata2 K562GSE18868 74946911 74947643 732 0
Nanog ESGSE20650 74935946 74936368 422 0
Nanog hESGSE18292 74959230 74959378 148 0
Oct1 H2O2-HelaGSE14283 74949770 74949808 38 0
Oct1 H2O2-HelaGSE14283 74958796 74958826 30 0
Oct1 HelaGSE14283 74945217 74945260 43 0
Oct1 HelaGSE14283 74949770 74949821 51 0
Oct1 HelaGSE14283 74958778 74958826 48 0
Oct1 HelaGSE14283 74972569 74972610 41 0
Sox2 hESGSE18292 74959224 74959599 375 0
hScc1 BcellGSE12603 74959224 74959861 637 0
hScc1 CdLSGSE12603 74959224 74959785 561 0
hScc1 G2GSE9613 74959224 74959972 748 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
3306 EST chr10 74925516 74935319 245 mRNA USP54 chr10 74928058 74983104Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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