Annotation Detail for C1orf55
Basic Information Top
| Gene Symbol: | C1orf55 ( FLJ35382,RP4-671D7.1,dJ671D7.1 ) |
|---|---|
| Gene Full Name: | chromosome 1 open reading frame 55 |
| Band: | 1q42.12 |
| Quick Links | Entrez ID:163859; OMIM: NA; Uniprot ID:CA055_HUMAN; ENSEMBL ID: ENSG00000143751; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 266 | Phosphoserine (By similarity). | |
| 278 | Phosphoserine. | |
| 319 | Phosphothreonine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 278 | Phosphoserine. | Swiss-Prot 53.0 |
| 278 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 57 | N-linked | HMM predict |
| 226 | Phosphoserine(IKK) | HMM predict |
| 230 | Phosphoserine(CK2) | HMM predict |
| 231 | Phosphoserine(CK1) | HMM predict |
| 235 | Phosphoserine(CK1) | HMM predict |
| 235 | Phosphoserine(IKK) | HMM predict |
| 373 | Phosphoserine(ATM) | HMM predict |
| 373 | Phosphoserine(IKK) | HMM predict |
| 428 | Phosphoserine(CAMK2) | HMM predict |
| 437 | Isoleucine | HMM predict |
- RefSeq ID: NM_152608
- Location:chr1 224237030-224253654
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Gata1 | K562 | GSE18868 | 224253433 | 224254569 | 1136 | 347 |
| Gata2 | K562 | GSE18868 | 224253388 | 224254589 | 1201 | 334 |
| Gata2 | K562 | GSE18868 | 224263848 | 224264434 | 586 | 10487 |
| PHF8 | 293T | GSE20725 | 224253072 | 224254641 | 1569 | 202 |
| PHF8 | HeLa | GSE20725 | 224253247 | 224254340 | 1093 | 139 |
| PHF8 | Hs68minusFBS | GSE20725 | 224253091 | 224254460 | 1369 | 121 |
| Pol2 | GM12878 | GSE19551 | 224253332 | 224254755 | 1423 | 389 |
| PolII | HeLa | GSE12783 | 224252622 | 224254955 | 2333 | 134 |
| TAF | k562 | GSE8489 | 224254186 | 224254817 | 631 | 847 |
| TAF | k562 | GSE8489 | 224255986 | 224257852 | 1866 | 3265 |
| TFAP2C | MCF7 | GSE21234 | 224260156 | 224260680 | 524 | 6764 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 224230264 | 224230597 | 333 | 6600 |
| CTCF | CD4 | SISSRdata | 224230264 | 224230597 | 333 | 6600 |
| CTCF | G2 | GSE9613 | 224223149 | 224223618 | 469 | 13647 |
| CTCF | G2 | GSE9613 | 224226496 | 224227130 | 634 | 10218 |
| CTCF | G2 | GSE9613 | 224230280 | 224230642 | 362 | 6570 |
| PHF8 | Hs68minusFBS | GSE20725 | 224235659 | 224236046 | 387 | 1178 |
| RARA | MCF7 | GSE15244 | 224234203 | 224234923 | 720 | 2468 |
| hScc1 | Bcell | GSE12603 | 224230280 | 224230642 | 362 | 6570 |
| hScc1 | CdLS | GSE12603 | 224230280 | 224230642 | 362 | 6570 |
| hScc1 | CdLS | GSE12603 | 224232554 | 224233087 | 533 | 4210 |
| hScc1 | G2 | GSE9613 | 224230280 | 224230642 | 362 | 6570 |
| p63 | keratinocytes | GSE17611 | 224217846 | 224218666 | 820 | 18775 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | Jurkat | GSE17954 | 224251927 | 224254709 | 2782 | 0 |
| H3K4me3 | colorectal | cancer | 224252541 | 224253537 | 996 | 0 |
| H3ac | HepG2 | E | 224252464 | 224253641 | 1177 | 0 |
| PHF8 | Hs68plusFBS | GSE20725 | 224252783 | 224254481 | 1698 | 0 |
| TAF | Hela | GSE8489 | 224252942 | 224253511 | 569 | 0 |
| TAF | k562 | GSE8489 | 224252577 | 224253537 | 960 | 0 |
| hScc1 | Bcell | GSE12603 | 224253375 | 224253798 | 423 | 0 |
| hScc1 | CdLS | GSE12603 | 224241770 | 224242382 | 612 | 0 |
| p130 | Quiescent | GSE19898 | 224253310 | 224253784 | 474 | 0 |
| p130 | shRbQuiescent | GSE19898 | 224253089 | 224253818 | 729 | 0 |
| p130 | shRbSenescent | GSE19898 | 224253313 | 224253668 | 355 | 0 |
Validated miRNA targets