AutismKB 2.0

Annotation Detail for GLIS3


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Basic Information Top
Gene Symbol:GLIS3 ( FLJ38999,FLJ90578,MGC33662,ZNF515 )
Gene Full Name: GLIS family zinc finger 3
Band: 9p24.2
Quick LinksEntrez ID:169792; OMIM: 610192; Uniprot ID:GLIS3_HUMAN; ENSEMBL ID: ENSG00000107249; HGNC ID: 28510
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
507Bipartite nuclear localization signal
Location(AA) Modifications Resource
Location(AA) Modification Resource
9Phosphoserine(MAPK)HMM predict
13Phosphoserine(IKK)HMM predict
13Phosphoserine(ATM)HMM predict
16O-linkedHMM predict
17O-linkedHMM predict
50Phosphoserine(IKK)HMM predict
53O-linkedHMM predict
57Phosphoserine(IKK)HMM predict
59O-linkedHMM predict
61Phosphoserine(ATM)HMM predict
61Phosphoserine(IKK)HMM predict
63Phosphoserine(IKK)HMM predict
86Phosphoserine(ATM)HMM predict
108Phosphoserine(IKK)HMM predict
110Phosphoserine(IKK)HMM predict
125Phosphoserine(IKK)HMM predict
125Phosphoserine(ATM)HMM predict
125Phosphoserine(CDC2)HMM predict
125O-linkedHMM predict
129O-linkedHMM predict
129Phosphoserine(ATM)HMM predict
129Phosphoserine(CDC2)HMM predict
129Phosphoserine(CDK)HMM predict
133Phosphoserine(CK1)HMM predict
134Phosphoserine(PKB)HMM predict
135Phosphothreonine(PKA)HMM predict
139PhosphoserineHMM predict
142Phosphoserine(CK1)HMM predict
148Phosphoserine(PKG)HMM predict
150Phosphoserine(ATM)HMM predict
150Phosphoserine(MAPK)HMM predict
174Phosphotyrosine(INSR)HMM predict
176N-linkedHMM predict
181Phosphoserine(CAMK2)HMM predict
184N-linkedHMM predict
186Phosphoserine(CDC2)HMM predict
266Phosphoserine(ATM)HMM predict
266Phosphoserine(IKK)HMM predict
385S-palmitoylHMM predict
454N-linkedHMM predict
483Phosphothreonine(PKA)HMM predict
496Phosphoserine(CK1)HMM predict
531Phosphoserine(CDC2)HMM predict
560N-linkedHMM predict
579O-linkedHMM predict
579O-linkedHMM predict
582O-linkedHMM predict
593N-linkedHMM predict
596Phosphoserine(ATM)HMM predict
596O-linkedHMM predict
614O-linkedHMM predict
640Phosphotyrosine(Abl)HMM predict
657N-linkedHMM predict
663N-linkedHMM predict
723Phosphoserine(PKB)HMM predict
723Phosphoserine(CK1)HMM predict
765Phosphoserine(CK1)HMM predict
765Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001042413
  • Location:chr9 3814127-4290034
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 4305610 4305927 317 15734
CTCF CD4SISSRdata 4305610 4305927 317 15734
STAT1 IFNSISSRdata 4305546 4306065 519 15771
hScc1 BcellGSE12603 4305636 4306096 460 15832
hScc1 CdLSGSE12603 4305350 4306397 1047 15839
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 4255609 4255647 38 0
ER E2-MCF7GSE14664 4260399 4260432 33 0
Oct1 H2O2-HelaGSE14283 4177917 4177948 31 0
Oct1 H2O2-HelaGSE14283 4189019 4189076 57 0
Oct1 HelaGSE14283 4189020 4189062 42 0
Oct1 HelaGSE14283 4260397 4260428 31 0
Oct1 HelaGSE14283 4260471 4260508 37 0
P300 T30-glioblastomaGSE21026 4225579 4226877 1298 0
P300 T30-glioblastomaGSE21026 4252269 4253867 1598 0
Rb GrowingGSE19898 4244140 4244292 152 0
STAT1 HeLaGSE12782 4156354 4157656 1302 0
STAT1 HeLaGSE12783 4156388 4158132 1744 0
STAT1 HeLaGSE12783 4277579 4278426 847 0
hScc1 BcellGSE12603 4287982 4288332 350 0
hScc1 BcellGSE12603 4289431 4290053 622 0
p130 shRbQuiescentGSE19898 4287265 4288028 763 0
p63 keratinocytesGSE17611 4249329 4250143 814 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
26162 mRNA C9orf70 chr9 3888645 3891247 145 mRNA GLIS3 chr9 3817676 4142183Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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