AutismKB 2.0

Annotation Detail for SSBP4


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Basic Information Top
Gene Symbol:SSBP4 ( MGC3181 )
Gene Full Name: single stranded DNA binding protein 4
Band: 19p13.1
Quick LinksEntrez ID:170463; OMIM: 607391; Uniprot ID:SSBP4_HUMAN; ENSEMBL ID: ENSG00000130511; HGNC ID: 15676
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
341Phosphoserine.
342Phosphoserine.
355Phosphothreonine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
50N-linkedHMM predict
100O-linkedHMM predict
128Phosphoserine(IKK)HMM predict
128Phosphoserine(ATM)HMM predict
128O-linkedHMM predict
131O-linkedHMM predict
149Phosphoserine(CDC2)HMM predict
159Phosphothreonine(PKA)HMM predict
159Phosphothreonine(PKC)HMM predict
164Phosphoserine(ATM)HMM predict
164O-linkedHMM predict
173Phosphoserine(ATM)HMM predict
184O-linkedHMM predict
201Phosphothreonine(MAPK)HMM predict
208O-linkedHMM predict
254O-linkedHMM predict
255O-linkedHMM predict
257O-linkedHMM predict
260Phosphoserine(IKK)HMM predict
278Phosphoserine(CDC2)HMM predict
290Phosphotyrosine(SRC)HMM predict
342Phosphoserine(CDC2)HMM predict
355Phosphothreonine(MAPK)HMM predict
378O-linkedHMM predict
380GlycineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001009998
  • Location:chr19 18391135-18406458
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 18382487 18382692 205 8546
CTCF CD4SISSRdata 18382487 18382692 205 8546
CTCF G2GSE9613 18382257 18382777 520 8619
CTCF G2GSE9613 18388678 18389413 735 2090
RARA MCF7GSE15244 18385859 18386799 940 4807
TFAP2C MCF7GSE21234 18390307 18391004 697 480
hScc1 BcellGSE12603 18382257 18382777 520 8619
hScc1 BcellGSE12603 18388645 18389997 1352 1815
hScc1 CdLSGSE12603 18382257 18382777 520 8619
hScc1 G2GSE9613 18382257 18382777 520 8619
p130 SenescentGSE19898 18389657 18389994 337 1310
p130 shRbQuiescentGSE19898 18382341 18382881 540 8525
p130 shRbSenescentGSE19898 18382436 18382622 186 8607
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 18395450 18395700 250 0
hScc1 BcellGSE12603 18404815 18405074 259 0
p130 shRbSenescentGSE19898 18400798 18401155 357 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12904 mRNA SSBP4 chr19 18391135 18406459 218 mRNA ISYNA1 chr19 18406241 18409921Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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