Annotation Detail for AFP
Basic Information Top
| Gene Symbol: | AFP ( FETA,HPAFP ) |
|---|---|
| Gene Full Name: | alpha-fetoprotein |
| Band: | 4q13.3 |
| Quick Links | Entrez ID:174; OMIM: 104150; Uniprot ID:FETA_HUMAN; ENSEMBL ID: ENSG00000081051; HGNC ID: 317 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 251 | N-linked (GlcNAc...). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 251 | N-linked (GlcNAc...)./FTId=CAR |
| Location(AA) | Modification | Resource |
|---|---|---|
| 14 | N-linked | HMM predict |
| 60 | Phosphotyrosine(Syk) | HMM predict |
| 60 | Phosphotyrosine(SRC) | HMM predict |
| 84 | Phosphoserine(CK2) | HMM predict |
| 115 | Phosphoserine(ATM) | HMM predict |
| 130 | Methyllysine | HMM predict |
| 192 | S-palmitoyl | HMM predict |
| 193 | S-palmitoyl | HMM predict |
| 217 | Phosphoserine(CK1) | HMM predict |
| 251 | N-linked | HMM predict |
| 290 | Phosphoserine(ATM) | HMM predict |
| 404 | Phosphotyrosine(INSR) | HMM predict |
| 443 | Phosphothreonine(CK2) | HMM predict |
| 491 | Phosphothreonine(PKA) | HMM predict |
| 521 | Phosphotyrosine(INSR) | HMM predict |
| 547 | Phosphothreonine(PKC) | HMM predict |
| 564 | Phosphothreonine(CK2) | HMM predict |
- RefSeq ID: NM_001134
- Location:chr4 74520796-74540355
- strand:+
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Oct4 | hES | GSE17917 | 74545503 | 74545756 | 253 | 5274 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 74530555 | 74531457 | 902 | 0 |
| H3ac | HepG2 | E | 74525147 | 74525839 | 692 | 0 |
| H3ac | HepG2 | E | 74526391 | 74527215 | 824 | 0 |
| PAX3-FKHR | Rh4 | GSE19063 | 74534797 | 74537452 | 2655 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7i* | hsa-let-7i | 12 | 21176238 |
| hsa-miR-10b | hsa-mir-10b | 2 | 21176238 |
| hsa-miR-10b* | hsa-mir-10b | 2 | 21176238 |
| hsa-miR-146a | hsa-mir-146a | 5 | 20815808 |
| hsa-miR-146a* | hsa-mir-146a | 5 | 20815808 |
| hsa-miR-148b* | hsa-mir-148b | 12 | 21176238 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 21278583 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 21278583 |
| hsa-miR-181a | hsa-mir-181a-2 | 9 | 19585654 |
| hsa-miR-181a | hsa-mir-181a-1 | 1 | 19585654 |
| hsa-miR-181a* | hsa-mir-181a-1 | 1 | 19585654 |
| hsa-miR-181a-2* | hsa-mir-181a-2 | 9 | 19585654 |
| hsa-miR-181b | hsa-mir-181b-1 | 1 | 19585654 |
| hsa-miR-181b | hsa-mir-181b-2 | 9 | 19585654 |
| hsa-miR-181c | hsa-mir-181c | 19 | 19585654 |
| hsa-miR-181c* | hsa-mir-181c | 19 | 19585654 |
| hsa-miR-181d | hsa-mir-181d | 19 | 19585654 |
| hsa-miR-195 | hsa-mir-195 | 17 | 21278583 |
| hsa-miR-195* | hsa-mir-195 | 17 | 21278583 |
| hsa-miR-200a* | hsa-mir-200a | 1 | 21176238 |
| hsa-miR-21 | hsa-mir-21 | 17 | 21176238 |
| hsa-miR-21* | hsa-mir-21 | 17 | 21176238 |
| hsa-miR-215 | hsa-mir-215 | 1 | 20815808 |
| hsa-miR-224 | hsa-mir-224 | X | 20815808 |
| hsa-miR-34c-3p | hsa-mir-34c | 11 | 21176238 |
| hsa-miR-491-5p | hsa-mir-491 | 9 | 20015148 |
| hsa-miR-574-3p | hsa-mir-574 | 4 | 20815808 |
| hsa-miR-885-5p | hsa-mir-885 | 3 | 20815808 |
| No data |
Cis-Nats regulation