AutismKB 2.0

Annotation Detail for ARID2


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Basic Information Top
Gene Symbol:ARID2 ( BAF200,DKFZp686G052,DKFZp779P0222,FLJ30619,KIAA1557,p200 )
Gene Full Name: AT rich interactive domain 2 (ARID, RFX-like)
Band: 12q12
Quick LinksEntrez ID:196528; OMIM: 609539; Uniprot ID:ARID2_HUMAN; ENSEMBL ID: ENSG00000189079; HGNC ID: 18037
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
317LXXLL.
631Phosphoserine.
635Phosphoserine.
653Phosphothreonine.
689Phosphoserine.
692Phosphothreonine.
1496Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
32Phosphoserine(CDC2)HMM predict
64Phosphoserine(PKG)HMM predict
100Phosphotyrosine(Jak)HMM predict
158Phosphotyrosine(INSR)HMM predict
185N-linkedHMM predict
254N-linkedHMM predict
309N-linkedHMM predict
400Phosphotyrosine(EGFR)HMM predict
497O-linkedHMM predict
577N-linkedHMM predict
587Phosphoserine(CK1)HMM predict
588Phosphoserine(CK1)HMM predict
631O-linkedHMM predict
631Phosphoserine(CDK)HMM predict
631PhosphoserineHMM predict
635O-linkedHMM predict
635Phosphoserine(CDC2)HMM predict
635Phosphoserine(CDK)HMM predict
643Phosphoserine(ATM)HMM predict
657N-linkedHMM predict
661N-linkedHMM predict
680Phosphothreonine(PKC)HMM predict
687N-linkedHMM predict
692Phosphothreonine(CDK)HMM predict
746N-linkedHMM predict
748O-linkedHMM predict
755O-linkedHMM predict
785O-linkedHMM predict
812O-linkedHMM predict
813Phosphoserine(IKK)HMM predict
814O-linkedHMM predict
816Phosphoserine(CAMK2)HMM predict
816Phosphoserine(ATM)HMM predict
823O-linkedHMM predict
825O-linkedHMM predict
825Phosphoserine(CDC2)HMM predict
831O-linkedHMM predict
832O-linkedHMM predict
832O-linkedHMM predict
833Phosphoserine(ATM)HMM predict
836O-linkedHMM predict
837O-linkedHMM predict
837Phosphoserine(IKK)HMM predict
840Phosphoserine(ATM)HMM predict
842Phosphoserine(ATM)HMM predict
853Phosphotyrosine(Jak)HMM predict
855O-linkedHMM predict
856O-linkedHMM predict
859O-linkedHMM predict
885Phosphoserine(CDC2)HMM predict
903O-linkedHMM predict
903Phosphoserine(ATM)HMM predict
939Phosphotyrosine(EGFR)HMM predict
967N-linkedHMM predict
969O-linkedHMM predict
969O-linkedHMM predict
969O-linkedHMM predict
969Phosphothreonine(MAPK)HMM predict
971O-linkedHMM predict
973O-linkedHMM predict
973Phosphoserine(CDC2)HMM predict
975O-linkedHMM predict
975Phosphoserine(CDC2)HMM predict
989O-linkedHMM predict
990O-linkedHMM predict
991O-linkedHMM predict
992O-linkedHMM predict
993Phosphothreonine(CDC2)HMM predict
993Phosphothreonine(CDK)HMM predict
996Phosphoserine(ATM)HMM predict
996Phosphoserine(IKK)HMM predict
1002O-linkedHMM predict
1004O-linkedHMM predict
1018O-linkedHMM predict
1018Phosphoserine(CDC2)HMM predict
1018Phosphoserine(IKK)HMM predict
1054Phosphoserine(IKK)HMM predict
1072Phosphothreonine(CDC2)HMM predict
1072Phosphothreonine(MAPK)HMM predict
1094Phosphoserine(CDC2)HMM predict
1115Phosphothreonine(MAPK)HMM predict
1137O-linkedHMM predict
1137O-linkedHMM predict
1142Phosphothreonine(PKC)HMM predict
1159Phosphoserine(CDC2)HMM predict
1173O-linkedHMM predict
1181O-linkedHMM predict
1191N-linkedHMM predict
1223Phosphoserine(IKK)HMM predict
1228Phosphoserine(IKK)HMM predict
1229O-linkedHMM predict
1231O-linkedHMM predict
1232O-linkedHMM predict
1268N-linkedHMM predict
1277N-linkedHMM predict
1280N-linkedHMM predict
1300Phosphoserine(CAMK2)HMM predict
1435Phosphoserine(IKK)HMM predict
1466O-linkedHMM predict
1470Phosphoserine(CDC2)HMM predict
1476O-linkedHMM predict
1476Phosphoserine(CK1)HMM predict
1491Phosphoserine(CK1)HMM predict
1496Phosphoserine(IKK)HMM predict
1507N-linkedHMM predict
1514Phosphothreonine(PKC)HMM predict
1552O-linkedHMM predict
1593Phosphothreonine(MAPK)HMM predict
1598O-linkedHMM predict
1598Phosphoserine(CDC2)HMM predict
1598Phosphoserine(MAPK)HMM predict
1608N-linkedHMM predict
1610Phosphoserine(ATM)HMM predict
1619O-linkedHMM predict
1619Phosphoserine(ATM)HMM predict
1710Phosphoserine(ATM)HMM predict
1710Phosphoserine(IKK)HMM predict
1714O-linkedHMM predict
1719O-linkedHMM predict
1723O-linkedHMM predict
1724O-linkedHMM predict
1726Phosphothreonine(MAPK)HMM predict
1819N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152641
  • Location:chr12 44409886-44588085
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 44405726 44406205 479 3921
CTCF G2GSE9613 44407522 44407761 239 2245
CTCF G2GSE9613 44408658 44410612 1954 252
ETS1 JurkatGSE17954 44406980 44408356 1376 2219
ETS1 JurkatGSE17954 44408460 44409672 1212 821
FOXA1 MCF7GSE15244 44407086 44407833 747 2427
H3K4me3 colorectalcancer 44405833 44407266 1433 3337
H3K4me3 colorectalcancer 44408317 44408718 401 1369
H3ac HepG2E 44405763 44407522 1759 3244
NFkBII GM10847GSE19485 44406538 44409527 2989 1854
NFkBII GM12878GSE19485 44406875 44410205 3330 1347
NFkBII GM15510GSE19485 44406375 44410322 3947 1538
PHF8 HeLaGSE20725 44406885 44410563 3678 1163
RARA MCF7GSE15244 44407945 44408678 733 1575
TAF HelaGSE8489 44405377 44408831 3454 2783
TAF k562GSE8489 44405538 44408831 3293 2702
hScc1 BcellGSE12603 44405763 44406129 366 3941
hScc1 BcellGSE12603 44406872 44407873 1001 2514
hScc1 BcellGSE12603 44408965 44409874 909 467
hScc1 CdLSGSE12603 44405577 44406205 628 3996
hScc1 CdLSGSE12603 44408718 44409180 462 938
hScc1 G2GSE9613 44408791 44410160 1369 411
p130 shRbQuiescentGSE19898 44408609 44409121 512 1022
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 44425921 44426275 354 0
CTCF CD4GSE12889 44442603 44442867 264 0
CTCF CD4SISSRdata 44425921 44426275 354 0
CTCF CD4SISSRdata 44442603 44442867 264 0
CTCF G2GSE9613 44442535 44442783 248 0
CTCF G2GSE9613 44561878 44562125 247 0
CTCF G2GSE9613 44573411 44573632 221 0
FOXA1 MCF7GSE15244 44410646 44410995 349 0
FOXA1 MCF7GSE15244 44484105 44484391 286 0
FoxA1 MCF7MACSdata 44558761 44559017 256 0
H3K4me3 colorectalcancer 44410840 44411791 951 0
H3ac HepG2E 44410815 44411644 829 0
NRSF JurkatGSE13047 44474370 44474924 554 0
NRSF mAbJurkat 44474414 44475413 999 0
NRSF-mono JurkatQuESTdata 44474369 44474923 554 0
NRSF-poly JurkatQuESTdata 44474507 44474883 376 0
Nanog hESGSE18292 44411484 44412033 549 0
Oct1 H2O2-HelaGSE14283 44462661 44462694 33 0
Oct1 H2O2-HelaGSE14283 44573099 44573130 31 0
Oct1 HelaGSE14283 44410706 44410748 42 0
Oct1 HelaGSE14283 44535611 44535644 33 0
Pol3 GM12878GSE19551 44570311 44570728 417 0
RARA MCF7GSE15244 44484105 44484391 286 0
RARG MCF7GSE15244 44530570 44531544 974 0
Sox2 hESGSE18292 44411487 44411788 301 0
TAF HelaGSE8489 44410576 44412732 2156 0
TAF HelaGSE8489 44440381 44440755 374 0
TAF k562GSE8489 44410883 44412693 1810 0
TFAP2C MCF7GSE21234 44558654 44559065 411 0
hScc1 CdLSGSE12603 44442407 44442854 447 0
p130 SenescentGSE19898 44410543 44410926 383 0
p63 keratinocytesGSE17611 44447966 44448971 1005 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-155 hsa-mir-155 21 18367535
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18367535
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
937 Unknown pSILAC miR-155 ARID2 down 75-50% 18668040
1135 Unknown pSILAC miR-1 ARID2 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000189079 n_a n_a n_a "lymphoblast, lymphocyte" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
ENSG00000189079 n_a n_a n_a "lymphoblast, lymphocyte" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
5909 mRNA ARID2 chr12 44409886 44588086 1920 mRNA chr12 44574869 44576789 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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