Annotation Detail for CDCP2

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Basic Information Top

Gene Symbol:	CDCP2 ( - )
Gene Full Name:	CUB domain containing protein 2
Band:	1p32.3
Quick Links	Entrez ID:200008; OMIM: 612320; Uniprot ID:CDCP2_HUMAN; ENSEMBL ID: ENSG00000157211; HGNC ID: 27297
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
40	N-linked (GlcNAc...) (Potential).
267	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_201546
Location:chr1 54377255-54392030
strand:-

Upstream the gene:9 results
Downstream the gene:14 results
Inside the gene:2 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	54396327	54396703	376	4485
CTCF	G2	GSE9613	54401295	54402026	731	9630
Rb	Growing	GSE19898	54392065	54392404	339	204
Rb	Quiescent	GSE19898	54392196	54392329	133	232
Rb	Senescent	GSE19898	54392070	54392444	374	227
TFAP2C	MCF7	GSE21234	54401069	54401848	779	9428
hScc1	Bcell	GSE12603	54396327	54396703	376	4485
p130	shRbSenescent	GSE19898	54392114	54392385	271	219
p63	keratinocytes	GSE17611	54405702	54406750	1048	14196

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T30-glioblastoma	GSE21026	54359358	54360367	1009	17393
CTCF	CD4	GSE12889	54359884	54360158	274	17235
CTCF	CD4	SISSRdata	54359884	54360158	274	17235
CTCF	G2	GSE9613	54358662	54360701	2039	17574
CTCF	G2	GSE9613	54363928	54364295	367	13144
CTCF	G2	GSE9613	54376020	54376184	164	1154
P300	T30-glioblastoma	GSE21026	54359399	54360288	889	17412
Rb	Growing	GSE19898	54359991	54360162	171	17179
Rb	Quiescent	GSE19898	54362456	54362578	122	14739
Rb	shRbQuiescent	GSE19898	54359920	54360165	245	17213
hScc1	Bcell	GSE12603	54359849	54360409	560	17127
hScc1	Bcell	GSE12603	54363964	54364467	503	13040
hScc1	G2	GSE9613	54359234	54360630	1396	17324
p130	shRbSenescent	GSE19898	54359740	54360010	270	17381

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	54378051	54378261	210	0
Oct1	Hela	GSE14283	54380307	54380339	32	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
820	EST		chr1	54361734	54387826	105	mRNA	LOC200008	chr1	54321085	54377767	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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