Annotation Detail for APLF
Basic Information Top
| Gene Symbol: | APLF ( APFL,C2orf13,FLJ16593,MGC47799,PALF,Xip1 ) |
|---|---|
| Gene Full Name: | aprataxin and PNKP like factor |
| Band: | 2p13.3 |
| Quick Links | Entrez ID:200558; OMIM: 611035; Uniprot ID:APLF_HUMAN; ENSEMBL ID: ENSG00000169621; HGNC ID: 28724 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 116 | Phosphoserine; by ATM. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 70 | Phosphoserine(IKK) | HMM predict |
| 126 | N-linked | HMM predict |
| 128 | Phosphothreonine(CDC2) | HMM predict |
| 131 | Phosphoserine(IKK) | HMM predict |
| 131 | Phosphoserine(CDC2) | HMM predict |
| 158 | O-linked | HMM predict |
| 158 | Phosphothreonine(MAPK) | HMM predict |
| 199 | N-linked | HMM predict |
| 227 | N-linked | HMM predict |
| 244 | N-linked | HMM predict |
| 245 | Phosphothreonine(CK2) | HMM predict |
| 245 | O-linked | HMM predict |
| 251 | Phosphothreonine(CK2) | HMM predict |
| 311 | Phosphothreonine(PKC) | HMM predict |
| 314 | Phosphothreonine(CDK) | HMM predict |
| 314 | Phosphothreonine(MAPK) | HMM predict |
| 327 | N-linked | HMM predict |
| 340 | Phosphoserine(ATM) | HMM predict |
| 343 | Phosphoserine(IKK) | HMM predict |
| 347 | Phosphoserine(PKA) | HMM predict |
| 348 | O-linked | HMM predict |
| 349 | Phosphoserine(IKK) | HMM predict |
| 349 | Phosphoserine(ATM) | HMM predict |
| 349 | Phosphoserine(CK1) | HMM predict |
| 350 | N-linked | HMM predict |
| 352 | Phosphoserine(IKK) | HMM predict |
| 353 | N-linked | HMM predict |
| 404 | Phosphotyrosine(Syk) | HMM predict |
| 404 | Phosphotyrosine(INSR) | HMM predict |
| 462 | Phosphotyrosine(INSR) | HMM predict |
| 465 | N-linked | HMM predict |
| 476 | Phosphotyrosine(SRC) | HMM predict |
| 476 | Phosphotyrosine(Syk) | HMM predict |
| 476 | Phosphotyrosine(INSR) | HMM predict |
| 476 | Phosphotyrosine(EGFR) | HMM predict |
| 476 | Sulfotyrosine | HMM predict |
| 507 | Phenylalanine | HMM predict |
| 508 | Phenylalanine | HMM predict |
| 508 | Methionine | HMM predict |
| 509 | Phenylalanine | HMM predict |
| 510 | Phenylalanine | HMM predict |
- RefSeq ID: NM_173545
- Location:chr2 68548245-68660796
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| NFkBII | GM15510 | GSE19485 | 68547442 | 68549003 | 1561 | 23 |
| NFkBII | GM18526 | GSE19485 | 68547348 | 68548877 | 1529 | 133 |
| PHF8 | 293T | GSE20725 | 68547355 | 68548794 | 1439 | 171 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 68675878 | 68676162 | 284 | 15224 |
| CTCF | CD4 | SISSRdata | 68675878 | 68676162 | 284 | 15224 |
| CTCF | G2 | GSE9613 | 68668739 | 68668965 | 226 | 8056 |
| CTCF | G2 | GSE9613 | 68669749 | 68669906 | 157 | 9031 |
| CTCF | G2 | GSE9613 | 68675856 | 68676037 | 181 | 15150 |
| ER | Fulvestrant-MCF7 | GSE14664 | 68662514 | 68662547 | 33 | 1734 |
| Oct1 | Hela | GSE14283 | 68670494 | 68670551 | 57 | 9726 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 68548011 | 68548661 | 650 | 0 |
| CTCF | G2 | GSE9613 | 68609777 | 68610987 | 1210 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 68564624 | 68564672 | 48 | 0 |
| Fos | K562 | GSE19551 | 68646433 | 68647004 | 571 | 0 |
| Myc | K562 | GSE19551 | 68645031 | 68645560 | 529 | 0 |
| Nanog | ES | GSE20650 | 68548016 | 68548675 | 659 | 0 |
| Oct1 | Hela | GSE14283 | 68559685 | 68559720 | 35 | 0 |
| Oct1 | Hela | GSE14283 | 68656167 | 68656204 | 37 | 0 |
| TFAP2C | MCF7 | GSE21234 | 68646531 | 68646812 | 281 | 0 |
Validated miRNA targets