AutismKB 2.0

Annotation Detail for SPNS3


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Basic Information Top
Gene Symbol:SPNS3 ( MGC29671 )
Gene Full Name: spinster homolog 3 (Drosophila)
Band: 17p13.2
Quick LinksEntrez ID:201305; OMIM: 611701; Uniprot ID:SPNS3_HUMAN; ENSEMBL ID: ENSG00000182557; HGNC ID: 28433
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_182538
  • Location:chr17 4283967-4338246
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 4283020 4284543 1523 186
CTCF CD4GSE12889 4270661 4270972 311 13151
CTCF CD4SISSRdata 4270661 4270972 311 13151
Myc K562GSE19551 4270691 4271066 375 13089
Sox2 hESGSE18292 4270671 4271012 341 13126
hScc1 BcellGSE12603 4270735 4271126 391 13037
hScc1 BcellGSE12603 4276655 4276942 287 7169
hScc1 CdLSGSE12603 4270735 4271161 426 13020
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 4353539 4355350 1811 16198
CTCF G2GSE9613 4348811 4349540 729 10929
H3K27me3 colorectalcancer 4350905 4351304 399 12858
Myc K562GSE19551 4343322 4343574 252 5202
NRSF JurkatGSE13047 4342623 4343898 1275 5014
NRSF mAbJurkat 4340250 4341138 888 2448
NRSF mAbJurkat 4341616 4342214 598 3669
NRSF mAbJurkat 4342722 4343724 1002 4977
NRSF mAbJurkat 4344491 4344890 399 6444
NRSF mAbJurkat 4345697 4345866 169 7535
NRSF-mono JurkatQuESTdata 4342629 4343897 1268 5017
NRSF-poly JurkatQuESTdata 4342739 4343747 1008 4997
RARG MCF7GSE15244 4343059 4343485 426 5026
TFAP2C MCF7GSE21234 4340457 4341171 714 2568
TFAP2C MCF7GSE21234 4347268 4347836 568 9306
TFAP2C MCF7GSE21234 4354936 4355717 781 17080
hScc1 BcellGSE12603 4338784 4338923 139 607
p130 SenescentGSE19898 4355367 4355609 242 17242
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 4285588 4285796 208 0
CTCF G2GSE9613 4298695 4299051 356 0
ER Fulvestrant-MCF7GSE14664 4308281 4308317 36 0
Oct1 HelaGSE14283 4308281 4308317 36 0
hScc1 BcellGSE12603 4299289 4299502 213 0
hScc1 BcellGSE12603 4335778 4336036 258 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10508 mRNA MGC29671 chr17 4283967 4338247 140 mRNA chr17 4330423 4336496Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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