Annotation Detail for STOM
Basic Information Top
| Gene Symbol: | STOM ( BND7,EPB7,EPB72 ) |
|---|---|
| Gene Full Name: | stomatin |
| Band: | 9q33.2 |
| Quick Links | Entrez ID:2040; OMIM: 133090; Uniprot ID:STOM_HUMAN; ENSEMBL ID: ENSG00000148175; HGNC ID: 3383 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 10 | Phosphoserine; by PKA. | |
| 161 | Phosphoserine (By similarity). | |
| 244 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 9 | Phosphoserine (PKA | |
| 10 | Phosphoserine (by PKA). | Swiss-Prot 53.0 |
| 30 | S-palmitoyl cysteine. | Swiss-Prot 53.0 |
| 87 | S-palmitoyl cysteine; partial. | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 7 | Phosphothreonine(PKC) | HMM predict |
| 7 | Phosphothreonine(PKA) | HMM predict |
| 10 | Phosphoserine(PKA) | HMM predict |
| 22 | Phosphoserine(CDC2) | HMM predict |
| 30 | S-palmitoyl | HMM predict |
| 87 | S-palmitoyl | HMM predict |
| 128 | N-linked | HMM predict |
| 135 | N-linked | HMM predict |
| 138 | N-linked | HMM predict |
| 264 | N-linked | HMM predict |
| 285 | Serine | HMM predict |
- RefSeq ID: NM_198194
- Location:chr9 123141177-123172365
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 123174341 | 123175586 | 1245 | 2598 |
| FoxA1 | MCF7 | MACSdata | 123174584 | 123174962 | 378 | 2408 |
| Oct1 | Hela | GSE14283 | 123181469 | 123181495 | 26 | 9117 |
| TAF | k562 | GSE8489 | 123172505 | 123172883 | 378 | 329 |
| TAF | k562 | GSE8489 | 123174341 | 123174550 | 209 | 2080 |
| TFAP2C | MCF7 | GSE21234 | 123171779 | 123172972 | 1193 | 10 |
| USF1 | HepG2 | E | 123174341 | 123174616 | 275 | 2113 |
| USF1 | HepG2 | E | 123175020 | 123175307 | 287 | 2798 |
| USF2 | HepG2 | E | 123174341 | 123174653 | 312 | 2132 |
| USF2 | HepG2 | E | 123175020 | 123175232 | 212 | 2761 |
| hScc1 | Bcell | GSE12603 | 123171854 | 123172883 | 1029 | 3 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3ac | HepG2 | E | 123171051 | 123171891 | 840 | 0 |
| Myc | K562 | GSE19551 | 123153314 | 123153789 | 475 | 0 |
| Oct1 | Hela | GSE14283 | 123141509 | 123141547 | 38 | 0 |
| PHF8 | 293T | GSE20725 | 123171577 | 123173021 | 1444 | 0 |
| PHF8 | HeLa | GSE20725 | 123171495 | 123173055 | 1560 | 0 |
| Rb | Growing | GSE19898 | 123153104 | 123153403 | 299 | 0 |
| STAT1 | HeLa | GSE12782 | 123164428 | 123165856 | 1428 | 0 |
| STAT1 | HeLa | GSE12783 | 123164462 | 123165781 | 1319 | 0 |
| TAF | Hela | GSE8489 | 123171051 | 123171376 | 325 | 0 |
| p130 | Quiescent | GSE19898 | 123152548 | 123152796 | 248 | 0 |
| p130 | shRbSenescent | GSE19898 | 123152324 | 123152524 | 200 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 399 | Unknown | MicroArray | miR-124 | STOM | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000148175 | G1-to-S transition | n_a | n_a | "epithelium, squamous cell, lymphocyte, leukocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, sarcoma" |
Cis-Nats regulation