Annotation Detail for CLN8
Basic Information Top
| Gene Symbol: | CLN8 ( C8orf61,EPMR,FLJ39417 ) |
|---|---|
| Gene Full Name: | ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) |
| Band: | 8p23.3 |
| Quick Links | Entrez ID:2055; OMIM: 607837; Uniprot ID:CLN8_HUMAN; ENSEMBL ID: ENSG00000182372; HGNC ID: 2079 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 286 | ER-retrieval signal. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 50 | N-linked | HMM predict |
| 254 | Phosphothreonine(PKA) | HMM predict |
- RefSeq ID: NM_018941
- Location:chr8 1699347-1719856
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 1681338 | 1681535 | 197 | 17911 |
| CTCF | CD4 | SISSRdata | 1681338 | 1681535 | 197 | 17911 |
| CTCF | G2 | GSE9613 | 1698721 | 1698933 | 212 | 521 |
| ER | MCF7 | GSE19013 | 1692467 | 1693077 | 610 | 6576 |
| FOXA1 | DLD1 | GSE12801 | 1680809 | 1681529 | 720 | 18179 |
| FOXA1 | MCF7 | GSE15244 | 1679731 | 1680099 | 368 | 19433 |
| FOXA1 | MCF7 | GSE15244 | 1680574 | 1681913 | 1339 | 18104 |
| FOXA1 | MCF7 | GSE15244 | 1695638 | 1696088 | 450 | 3485 |
| H3K4me3 | colorectal | cancer | 1698721 | 1698933 | 212 | 521 |
| H3ac | HepG2 | E | 1698372 | 1698654 | 282 | 835 |
| P300 | T30-glioblastoma | GSE21026 | 1690921 | 1691881 | 960 | 7947 |
| PHF8 | HeLa | GSE20725 | 1698357 | 1699001 | 644 | 669 |
| RARA | MCF7 | GSE15244 | 1680574 | 1682271 | 1697 | 17925 |
| RARG | MCF7 | GSE15244 | 1680574 | 1681913 | 1339 | 18104 |
| RARG | MCF7 | GSE15244 | 1695884 | 1696088 | 204 | 3362 |
| Rb | Senescent | GSE19898 | 1691338 | 1691561 | 223 | 7898 |
| TAF | Hela | GSE8489 | 1685905 | 1686340 | 435 | 13225 |
| hScc1 | Bcell | GSE12603 | 1681246 | 1681685 | 439 | 17882 |
| hScc1 | Bcell | GSE12603 | 1698768 | 1698933 | 165 | 497 |
| hScc1 | CdLS | GSE12603 | 1681317 | 1681722 | 405 | 17828 |
| hScc1 | CdLS | GSE12603 | 1698687 | 1698933 | 246 | 538 |
| hScc1 | G2 | GSE9613 | 1698687 | 1698933 | 246 | 538 |
| p130 | Senescent | GSE19898 | 1690946 | 1691782 | 836 | 7984 |
| p130 | shRbQuiescent | GSE19898 | 1690754 | 1691649 | 895 | 8146 |
| p130 | shRbSenescent | GSE19898 | 1690921 | 1691615 | 694 | 8080 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 1716925 | 1717077 | 152 | 0 |
| CTCF | CD4 | SISSRdata | 1716925 | 1717077 | 152 | 0 |
| CTCF | Hela | GSE12889 | 1716916 | 1717105 | 189 | 0 |
| CTCF | G2 | GSE9613 | 1699358 | 1700289 | 931 | 0 |
| CTCF | G2 | GSE9613 | 1719046 | 1719252 | 206 | 0 |
| FOXA1 | MCF7 | GSE15244 | 1700034 | 1700429 | 395 | 0 |
| FOXA1 | MCF7 | GSE15244 | 1708754 | 1709192 | 438 | 0 |
| H3ac | HepG2 | E | 1700103 | 1700836 | 733 | 0 |
| RARA | MCF7 | GSE15244 | 1700103 | 1700394 | 291 | 0 |
| RARG | MCF7 | GSE15244 | 1700137 | 1700366 | 229 | 0 |
| TFAP2C | MCF7 | GSE21234 | 1699920 | 1700382 | 462 | 0 |
| TFAP2C | MCF7 | GSE21234 | 1712337 | 1712739 | 402 | 0 |
| TFAP2C | MCF7 | GSE21234 | 1713626 | 1713900 | 274 | 0 |
| USF1 | HepG2 | E | 1699997 | 1700872 | 875 | 0 |
| hScc1 | Bcell | GSE12603 | 1699680 | 1699997 | 317 | 0 |
| hScc1 | CdLS | GSE12603 | 1708718 | 1708927 | 209 | 0 |
| hScc1 | CdLS | GSE12603 | 1716964 | 1717198 | 234 | 0 |
| hScc1 | G2 | GSE9613 | 1699358 | 1700289 | 931 | 0 |
| p130 | shRbSenescent | GSE19898 | 1699305 | 1699526 | 221 | 0 |
Validated miRNA targets