AutismKB 2.0

Annotation Detail for FAM171A1


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Basic Information Top
Gene Symbol:FAM171A1 ( C10orf38,FLJ12884,MGC130014,MGC130015 )
Gene Full Name: family with sequence similarity 171, member A1
Band: 10p13
Quick LinksEntrez ID:221061; OMIM: NA; Uniprot ID:F1711_HUMAN; ENSEMBL ID: ENSG00000148468; HGNC ID: 23522
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
159N-linked (GlcNAc...).
190N-linked (GlcNAc...) (Potential).
194N-linked (GlcNAc...) (Potential).
855Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001010924
  • Location:chr10 15293652-15453063
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 15453301 15453488 187 331
CTCF CD4SISSRdata 15453301 15453488 187 331
CTCF JurkatGSE12889 15453308 15453580 272 381
RARA MCF7GSE15244 15463481 15463732 251 10543
RARG MCF7GSE15244 15463118 15463732 614 10362
hScc1 CdLSGSE12603 15453441 15453742 301 528
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 15282295 15283370 1075 10820
P300 T30-glioblastomaGSE21026 15282566 15284529 1963 10105
RARA MCF7GSE15244 15282665 15283222 557 10709
RARG MCF7GSE15244 15282665 15283186 521 10727
hScc1 BcellGSE12603 15291655 15292683 1028 1484
hScc1 CdLSGSE12603 15291856 15292349 493 1550
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 15394187 15395082 895 0
ER Fulvestrant-MCF7GSE14664 15450289 15450347 58 0
ER MCF7GSE19013 15330523 15330912 389 0
Fos K562GSE19551 15407539 15408131 592 0
GABP HelaGSE8489 15314131 15314380 249 0
H3ac HepG2E 15449905 15452387 2482 0
Nanog hESGSE18292 15426852 15427179 327 0
Oct1 H2O2-HelaGSE14283 15350279 15350306 27 0
Oct1 H2O2-HelaGSE14283 15409786 15409815 29 0
Oct1 H2O2-HelaGSE14283 15437413 15437441 28 0
Oct1 HelaGSE14283 15389287 15389314 27 0
Oct1 HelaGSE14283 15437413 15437468 55 0
RUNX JurkatGSE17954 15322624 15322724 100 0
Rb SenescentGSE19898 15305207 15305343 136 0
Stat6 IL-4-hr1GSE17850 15313386 15313893 507 0
hScc1 BcellGSE12603 15452467 15452691 224 0
hScc1 CdLSGSE12603 15452467 15452691 224 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
2849 mRNA chr10 15293768 15298032 2175 mRNA C10orf38 chr10 15293651 15295943Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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