Annotation Detail for SLC39A12

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Basic Information Top

Gene Symbol:	SLC39A12 ( FLJ30499,MGC43205,MGC51099,bA570F3.1 )
Gene Full Name:	solute carrier family 39 (zinc transporter), member 12
Band:	10p12.33
Quick Links	Entrez ID:221074; OMIM: 608734; Uniprot ID:S39AC_HUMAN; ENSEMBL ID: ENSG00000148482; HGNC ID: 20860
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
585	XEXPHE-motif.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_152725
Location:chr10 18280826-18372217
strand:+

Upstream the gene:5 results
Downstream the gene:0 results
Inside the gene:9 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Fos	K562	GSE19551	18279198	18279731	533	1362
Oct1	Hela	GSE14283	18265808	18265850	42	14998
Oct1	Hela	GSE14283	18275667	18275706	39	5140
RNAII	Tamoxifen-MCF7	GSE14664	18267219	18267253	34	13591
hScc1	Bcell	GSE12603	18276900	18277028	128	3863

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	E2-MCF7	GSE14664	18317060	18317136	76	0
Oct1	H2O2-Hela	GSE14283	18302848	18302875	27	0
Oct1	H2O2-Hela	GSE14283	18328565	18328611	46	0
Oct1	H2O2-Hela	GSE14283	18368509	18368537	28	0
Oct1	Hela	GSE14283	18326497	18326532	35	0
Oct1	Hela	GSE14283	18328565	18328611	46	0
Oct1	Hela	GSE14283	18345223	18345251	28	0
STAT1	HeLa	GSE12783	18334270	18335626	1356	0
TAF	Hela	GSE8489	18337653	18337861	208	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
2868	mRNA	SLC39A12	chr10	18280826	18372218	188	mRNA		chr10	18330720	18339497	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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