AutismKB 2.0

Annotation Detail for SPATA13


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Basic Information Top
Gene Symbol:SPATA13 ( ARHGEF29,ASEF2,FLJ31208,FLJ35435,MGC129988,MGC129989 )
Gene Full Name: spermatogenesis associated 13
Band: 13q12.12
Quick LinksEntrez ID:221178; OMIM: 613324; Uniprot ID:SPT13_HUMAN; ENSEMBL ID: ENSG00000182957; HGNC ID: 23222
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
5Phosphoserine(IKK)HMM predict
37N-linkedHMM predict
95Phosphoserine(PKG)HMM predict
96N-linkedHMM predict
112N-linkedHMM predict
114Phosphoserine(CK2)HMM predict
130Phosphotyrosine(Abl)HMM predict
211Phosphoserine(CK2)HMM predict
211Phosphoserine(CK1)HMM predict
213N-linkedHMM predict
214Phosphoserine(CK1)HMM predict
216Phosphoserine(CK1)HMM predict
217Phosphothreonine(CDK)HMM predict
217Phosphothreonine(MAPK)HMM predict
219Phosphoserine(CK1)HMM predict
227Phosphoserine(CK1)HMM predict
227Phosphoserine(ATM)HMM predict
274Phosphothreonine(PKA)HMM predict
307Phosphotyrosine(Syk)HMM predict
404Phosphotyrosine(INSR)HMM predict
454Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_153023
  • Location:chr13 23632886-23776047
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 23620536 23622111 1575 11563
CTCF G2GSE9613 23622297 23622597 300 10440
CTCF G2GSE9613 23632694 23633027 333 26
ER MCF7GSE19013 23620954 23621541 587 11639
FOXA1 MCF7GSE15244 23620621 23621323 702 11915
Nanog hESGSE18292 23613485 23613789 304 19250
P300 T0-glioblastomaGSE21026 23620587 23621625 1038 11781
P300 T30-glioblastomaGSE21026 23620466 23622219 1753 11544
RARG MCF7GSE15244 23620550 23621323 773 11950
p130 QuiescentGSE19898 23620921 23621476 555 11688
p130 SenescentGSE19898 23620909 23621751 842 11557
p130 shRbQuiescentGSE19898 23621128 23621882 754 11382
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
RARG MCF7GSE15244 23778302 23778690 388 2449
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 23692330 23692673 343 0
CTCF CD4GSE12889 23701070 23701259 189 0
CTCF CD4GSE12889 23737304 23737452 148 0
CTCF CD4SISSRdata 23692330 23692673 343 0
CTCF CD4SISSRdata 23701070 23701259 189 0
CTCF CD4SISSRdata 23737304 23737452 148 0
CTCF G2GSE9613 23633546 23633897 351 0
CTCF G2GSE9613 23636935 23637354 419 0
CTCF G2GSE9613 23665544 23665684 140 0
CTCF G2GSE9613 23690163 23690424 261 0
CTCF G2GSE9613 23692203 23692591 388 0
CTCF G2GSE9613 23694941 23696709 1768 0
CTCF G2GSE9613 23701173 23701445 272 0
CTCF G2GSE9613 23719921 23720180 259 0
CTCF G2GSE9613 23723889 23724258 369 0
CTCF G2GSE9613 23725824 23726185 361 0
CTCF G2GSE9613 23726436 23726835 399 0
CTCF G2GSE9613 23733060 23733356 296 0
CTCF G2GSE9613 23744032 23744394 362 0
CTCF G2GSE9613 23745108 23745304 196 0
CTCF G2GSE9613 23753322 23753758 436 0
CTCF G2GSE9613 23758790 23759180 390 0
CTCF G2GSE9613 23771700 23771840 140 0
ER E2-MCF7GSE14664 23690429 23690464 35 0
ER E2-MCF7GSE14664 23691317 23691372 55 0
ER E2-MCF7GSE14664 23752568 23752645 77 0
ER E2-MCF7GSE14664 23764634 23764747 113 0
ER E2-MCF7GSE14664 23768336 23768402 66 0
ER E2-MCF7GSE14664 23768423 23768457 34 0
ER Fulvestrant-MCF7GSE14664 23690428 23690463 35 0
ER Fulvestrant-MCF7GSE14664 23705715 23705850 135 0
ER Fulvestrant-MCF7GSE14664 23758613 23758644 31 0
ER Fulvestrant-MCF7GSE14664 23764633 23764754 121 0
ER Fulvestrant-MCF7GSE14664 23768354 23768438 84 0
H3K4me3 colorectalcancer 23633690 23633968 278 0
Myc K562GSE19551 23701043 23701292 249 0
NFkBII GM10847GSE19485 23746192 23747674 1482 0
NFkBII GM12878GSE19485 23746011 23747810 1799 0
NFkBII GM12892GSE19485 23746009 23747804 1795 0
Oct1 H2O2-HelaGSE14283 23690431 23690461 30 0
Oct1 H2O2-HelaGSE14283 23737691 23737739 48 0
Oct1 HelaGSE14283 23690431 23690463 32 0
Oct1 HelaGSE14283 23737692 23737731 39 0
Oct1 HelaGSE14283 23740418 23740449 31 0
PHF8 HeLaGSE20725 23632585 23633812 1227 0
RARA MCF7GSE15244 23666378 23667030 652 0
RARA MCF7GSE15244 23692484 23693649 1165 0
RARG MCF7GSE15244 23654855 23655151 296 0
RARG MCF7GSE15244 23666272 23667030 758 0
RARG MCF7GSE15244 23692349 23693904 1555 0
RARG MCF7GSE15244 23726048 23726396 348 0
RARG MCF7GSE15244 23733060 23733454 394 0
RNAII Tamoxifen-MCF7GSE14664 23685934 23685968 34 0
Rb SenescentGSE19898 23632759 23633131 372 0
Rb shRbSenescenceGSE19898 23725832 23726075 243 0
USF1 HepG2E 23654141 23654394 253 0
USF1 HepG2E 23654855 23656787 1932 0
USF2 HepG2E 23655116 23656860 1744 0
VDR GM10855-stimGSE22484 23741937 23744644 2707 0
hScc1 BcellGSE12603 23633652 23633897 245 0
hScc1 BcellGSE12603 23691963 23692737 774 0
hScc1 BcellGSE12603 23695554 23695981 427 0
hScc1 CdLSGSE12603 23691963 23692700 737 0
hScc1 CdLSGSE12603 23701061 23701690 629 0
hScc1 G2GSE9613 23691963 23693008 1045 0
hScc1 G2GSE9613 23695010 23696741 1731 0
hScc1 G2GSE9613 23733024 23733356 332 0
hScc1 G2GSE9613 23745040 23745331 291 0
p130 SenescentGSE19898 23735858 23736034 176 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
6957 mRNA SPATA13 chr13 23632886 23776048 5736 EST chr13 23736973 23742709 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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