Annotation Detail for CPNE2

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Basic Information Top

Gene Symbol:	CPNE2 ( COPN2,CPN2,DKFZp686E06199,MGC16924 )
Gene Full Name:	copine II
Band:	16q13
Quick Links	Entrez ID:221184; OMIM: 604206; Uniprot ID:CPNE2_HUMAN; ENSEMBL ID: ENSG00000140848; HGNC ID: 2315
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:11 results

No data

Location(AA)	Modification	Resource
29	Phosphoserine(CK1)	HMM predict
299	Sulfotyrosine	HMM predict
299	Phosphotyrosine(INSR)	HMM predict
329	Phosphotyrosine(INSR)	HMM predict
382	N-linked	HMM predict
385	N-linked	HMM predict
399	Phosphoserine(IKK)	HMM predict
412	N-linked	HMM predict
414	Phosphoserine(CDC2)	HMM predict
418	N-linked	HMM predict
448	Phosphoserine(CK2)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_152727
Location:chr16 55684010-55739376
strand:+

Upstream the gene:5 results
Downstream the gene:0 results
Inside the gene:6 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	55683625	55684307	682	45
Oct1	H2O2-Hela	GSE14283	55682650	55682695	45	1338
Oct1	Hela	GSE14283	55682654	55682696	42	1336
P300	T30-glioblastoma	GSE21026	55682388	55683454	1066	1090
TFAP2C	MCF7	GSE21234	55682606	55683350	744	1033

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	55722856	55723184	328	0
CTCF	G2	GSE9613	55728958	55729177	219	0
ER	E2-MCF7	GSE14664	55698415	55698448	33	0
Fos	K562	GSE19551	55714519	55715103	584	0
STAT1	IFN	SISSRdata	55737803	55738613	810	0
hScc1	Bcell	GSE12603	55697491	55697648	157	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
10043	mRNA	CPNE2	chr16	55684010	55739377	3691	mRNA		chr16	55732308	55735999	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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