Annotation Detail for KDM1B
Basic Information
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| Gene Symbol: | KDM1B ( AOF1,C6orf193,DKFZp686I0412,FLJ33898,FLJ34109,FLJ43328,LSD2,bA204B7.3,dJ298J15.2 ) |
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| Gene Full Name: | lysine (K)-specific demethylase 1B |
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| Band: | 6p22.3 |
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| Quick Links | Entrez ID:221656; OMIM: 613081; Uniprot ID:KDM1B_HUMAN; ENSEMBL ID: ENSG00000165097; HGNC ID: 21577 |
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| Relate to Another Database: |
SFARIGene;
denovo-db |
| Location(AA) |
Modification |
|---|
| 17 | Phosphoserine. |
| Location(AA) |
Modifications |
Resource |
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
- RefSeq ID: NM_153042
- Location:chr6 18263597-18332062
- strand:+
| Transcrip Factors |
Experimental Cell |
Database |
TF Binding Start |
TF Binding End |
TF Binding Length |
The Distance to Gene |
|---|
| CTCF |
G2 | GSE9613 | 18263482 |
18263763 |
281 |
0 |
| CTCF |
G2 | GSE9613 | 18323158 |
18323473 |
315 |
0 |
| KLF4 |
hES | GSE17917 | 18331538 |
18331694 |
156 |
0 |
| NFkBII |
GM12878 | GSE19485 | 18263825 |
18265078 |
1253 |
0 |
| NFkBII |
GM18526 | GSE19485 | 18262554 |
18265258 |
2704 |
0 |
| Oct1 |
H2O2-Hela | GSE14283 | 18319240 |
18319270 |
30 |
0 |
| Oct1 |
H2O2-Hela | GSE14283 | 18327894 |
18327923 |
29 |
0 |
| Oct1 |
Hela | GSE14283 | 18313138 |
18313173 |
35 |
0 |
| Oct1 |
Hela | GSE14283 | 18319240 |
18319268 |
28 |
0 |
| Oct1 |
Hela | GSE14283 | 18327894 |
18327971 |
77 |
0 |
| Oct4 |
hES | GSE21916 | 18294298 |
18294601 |
303 |
0 |
| VDR |
GM10861-stim | GSE22484 | 18262349 |
18264978 |
2629 |
0 |
| p130 |
shRbQuiescent | GSE19898 | 18263985 |
18264516 |
531 |
0 |
| ID in Tarbase |
Data Type |
Support Type |
miRNA |
Gene |
Direct Support |
Publication |
|---|
| 678 |
Unknown |
MicroArray |
miR-373 |
AOF1 |
n_a |
15685193 |
| Ensembl |
Protein Type |
Differentially expressed in |
Pathology or Event |
Mis Regulation |
Gene Expression |
Tumour Involvement |
|---|
| ENSG00000165097 |
|
n_a |
n_a |
n_a |
lymphocyte |
"benign tumour, malignant tumour, carcinoma, sarcoma" |
Cis-Nats regulation