AutismKB 2.0

Annotation Detail for SEMA3D


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Basic Information Top
Gene Symbol:SEMA3D ( MGC39708,Sema-Z2,coll-2 )
Gene Full Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Band: 7q21.11
Quick LinksEntrez ID:223117; OMIM: 609907; Uniprot ID:SEM3D_HUMAN; ENSEMBL ID: ENSG00000153993; HGNC ID: 10726
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
139N-linked (GlcNAc...) (Potential).
607N-linked (GlcNAc...) (Potential).
724N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
139N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
607N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
724N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
139N-linkedHMM predict
261SulfotyrosineHMM predict
268Phosphoserine(ATM)HMM predict
268Phosphoserine(IKK)HMM predict
342Phosphotyrosine(Abl)HMM predict
348O-linkedHMM predict
464Phosphotyrosine(Syk)HMM predict
464Phosphotyrosine(SRC)HMM predict
464Phosphotyrosine(INSR)HMM predict
565Phosphothreonine(PKC)HMM predict
592Phosphoserine(CK1)HMM predict
607N-linkedHMM predict
621Phosphothreonine(PKC)HMM predict
722Phosphoserine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152754
  • Location:chr7 84462808-84589182
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 84453174 84453267 93 9588
NRSF pAbJurkat 84450888 84451865 977 11432
TFAP2C MCF7GSE21234 84448166 84448829 663 14311
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 84508847 84509447 600 0
ER E2-MCF7GSE14664 84534795 84534827 32 0
FoxA1 MCF7MACSdata 84582299 84582495 196 0
Myc K562GSE19551 84482273 84482445 172 0
Oct1 H2O2-HelaGSE14283 84478899 84478951 52 0
Oct1 H2O2-HelaGSE14283 84546088 84546116 28 0
Oct1 H2O2-HelaGSE14283 84583619 84583651 32 0
Oct1 HelaGSE14283 84478902 84478950 48 0
Oct1 HelaGSE14283 84563203 84563248 45 0
Oct1 HelaGSE14283 84583609 84583651 42 0
RNAII Tamoxifen-MCF7GSE14664 84566047 84566087 40 0
Sox2 hESGSE18292 84508977 84509367 390 0
TAF HelaGSE8489 84581062 84581435 373 0
hScc1 BcellGSE12603 84509023 84509411 388 0
hScc1 CdLSGSE12603 84490407 84490776 369 0
hScc1 CdLSGSE12603 84508814 84509477 663 0
hScc1 G2GSE9613 84488425 84488770 345 0
hScc1 G2GSE9613 84497954 84498615 661 0
hScc1 G2GSE9613 84508624 84509660 1036 0
p63 keratinocytesGSE17611 84523084 84523567 483 0
p63 keratinocytesGSE17611 84582216 84582734 518 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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