AutismKB 2.0

Annotation Detail for GPC4


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Basic Information Top
Gene Symbol:GPC4 ( K-glypican )
Gene Full Name: glypican 4
Band: Xq26.2
Quick LinksEntrez ID:2239; OMIM: 300168; Uniprot ID:GPC4_HUMAN; ENSEMBL ID: ENSG00000076716; HGNC ID: 4452
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
494O-linked (Xyl...) (glycosaminoglycan)
498O-linked (Xyl...) (glycosaminoglycan)
500O-linked (Xyl...) (glycosaminoglycan)
514N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
494O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
498O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
500O-linked (Xyl...) (glycosaminoglycan)(Potential).Swiss-Prot 53.0
514N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
529GPI-anchor amidated serine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
132Phosphotyrosine(INSR)HMM predict
239N-linkedHMM predict
254S-palmitoylHMM predict
334Phosphoserine(ATM)HMM predict
353O-linkedHMM predict
357Phosphoserine(CAMK2)HMM predict
375O-linkedHMM predict
490Phosphoserine(CK2)HMM predict
494Phosphoserine(IKK)HMM predict
494Phosphoserine(CK1)HMM predict
498Phosphoserine(IKK)HMM predict
514N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001448
  • Location:chrX 132262729-132376870
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 132376160 132377841 1681 130
CTCF G2GSE9613 132394109 132394424 315 17396
ER E2-MCF7GSE14664 132382520 132382603 83 5691
Fos K562GSE19551 132396059 132396367 308 19343
Nanog hESGSE18292 132379099 132379413 314 2386
RARA MCF7GSE15244 132388281 132388441 160 11491
USF1 HepG2E 132379242 132379457 215 2479
hScc1 BcellGSE12603 132377547 132377901 354 854
hScc1 CdLSGSE12603 132377462 132377863 401 792
hScc1 G2GSE9613 132376160 132377863 1703 141
hScc1 G2GSE9613 132394250 132394509 259 17509
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 132258772 132259677 905 3505
FoxA1 MCF7MACSdata 132258972 132259194 222 3647
FoxA1 MCF7MACSdata 132259239 132259457 218 3382
Oct1 HelaGSE14283 132243396 132243433 37 19315
RARA MCF7GSE15244 132258772 132259922 1150 3383
RARG MCF7GSE15244 132258772 132259677 905 3505
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 132305724 132305941 217 0
CBP T30-glioblastomaGSE21026 132305751 132305947 196 0
CTCF HelaGSE12889 132287633 132287746 113 0
CTCF JurkatGSE12889 132296801 132297008 207 0
FOXA1 MCF7GSE15244 132352356 132353043 687 0
Fos K562GSE19551 132361175 132361406 231 0
KLF4 hESGSE17917 132338828 132338988 160 0
Oct4 hESGSE21916 132321203 132321764 561 0
P300 T0-glioblastomaGSE21026 132305724 132305998 274 0
P300 T30-glioblastomaGSE21026 132305560 132306072 512 0
RARA MCF7GSE15244 132352619 132352891 272 0
RARG MCF7GSE15244 132314902 132315323 421 0
TFAP2C MCF7GSE21234 132299018 132299261 243 0
hScc1 CdLSGSE12603 132296663 132297052 389 0
hScc1 G2GSE9613 132269829 132269965 136 0
hScc1 G2GSE9613 132296699 132297018 319 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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