AutismKB 2.0

Annotation Detail for NTNG1


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Basic Information Top
Gene Symbol:NTNG1 ( KIAA0976,Lmnt1 )
Gene Full Name: netrin G1
Band: 1p13.3
Quick LinksEntrez ID:22854; OMIM: 608818; Uniprot ID:NTNG1_HUMAN; ENSEMBL ID: ENSG00000162631; HGNC ID: 23319
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
133N-linked (GlcNAc...) (Potential).
320N-linked (GlcNAc...) (Potential).
406N-linked (GlcNAc...) (Potential).
433N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
133N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
320N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
406N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
433N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
510GPI-anchor amidated serine (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
86Phosphotyrosine(INSR)HMM predict
133N-linkedHMM predict
214Phosphotyrosine(INSR)HMM predict
297S-palmitoylHMM predict
320N-linkedHMM predict
339Phosphoserine(IKK)HMM predict
357O-linkedHMM predict
433N-linkedHMM predict
448O-linkedHMM predict
512O-linkedHMM predict
535Phosphoserine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014917
  • Location:chr1 107484267-107825993
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 107484002 107484389 387 72
NRSF JurkatGSE13047 107479352 107480339 987 4422
NRSF JurkatSISSRdata 107479471 107479996 525 4534
NRSF mAbJurkat 107477270 107479042 1772 6112
NRSF mAbJurkat 107479481 107481152 1671 3951
NRSF mAbJurkat 107481538 107483314 1776 1842
NRSF-mono JurkatQuESTdata 107479407 107480332 925 4398
NRSF-poly JurkatQuESTdata 107479401 107480184 783 4475
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 107486222 107486504 282 0
CTCF CD4SISSRdata 107486222 107486504 282 0
CTCF G2GSE9613 107485350 107485809 459 0
CTCF G2GSE9613 107541303 107541547 244 0
CTCF G2GSE9613 107774570 107775096 526 0
ER E2-MCF7GSE14664 107491647 107491739 92 0
ER E2-MCF7GSE14664 107744835 107744886 51 0
ER E2-MCF7GSE14664 107767702 107767738 36 0
ER E2-MCF7GSE14664 107801873 107801910 37 0
ER Fulvestrant-MCF7GSE14664 107484270 107484338 68 0
ER Fulvestrant-MCF7GSE14664 107767704 107767740 36 0
FoxA1 MCF7MACSdata 107774849 107775160 311 0
KLF4 hESGSE17917 107549911 107550067 156 0
NFkBII GM12878GSE19485 107794147 107797461 3314 0
Nanog ESGSE20650 107696954 107697432 478 0
Nanog hESGSE18292 107525173 107525972 799 0
Nanog hESGSE18292 107629928 107630258 330 0
Oct1 H2O2-HelaGSE14283 107497326 107497358 32 0
Oct1 H2O2-HelaGSE14283 107528922 107528953 31 0
Oct1 H2O2-HelaGSE14283 107560014 107560071 57 0
Oct1 H2O2-HelaGSE14283 107800987 107801019 32 0
Oct1 HelaGSE14283 107528922 107528953 31 0
Oct1 HelaGSE14283 107668872 107668904 32 0
Oct1 HelaGSE14283 107744842 107744905 63 0
Oct1 HelaGSE14283 107767710 107767740 30 0
Oct4 hESGSE17917 107549912 107550057 145 0
RARA MCF7GSE15244 107638714 107639381 667 0
RARA MCF7GSE15244 107659605 107660622 1017 0
RARA MCF7GSE15244 107689150 107689602 452 0
Rb QuiescentGSE19898 107814127 107814251 124 0
hScc1 BcellGSE12603 107485273 107485738 465 0
hScc1 BcellGSE12603 107774528 107775205 677 0
hScc1 BcellGSE12603 107824670 107825417 747 0
hScc1 CdLSGSE12603 107485246 107486575 1329 0
hScc1 CdLSGSE12603 107774570 107775399 829 0
p63 keratinocytesGSE17611 107671353 107672009 656 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
1214 mRNA NTNG1 chr1 107394786 107736517 383 EST chr1 107720876 107721259 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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