AutismKB 2.0

Annotation Detail for TRAPPC8


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Basic Information Top
Gene Symbol:TRAPPC8 ( GSG1,HsT2706,KIAA1012,MGC71660,TRS85 )
Gene Full Name: trafficking protein particle complex 8
Band: 18q12.1
Quick LinksEntrez ID:22878; OMIM: NA; Uniprot ID:TPPC8_HUMAN; ENSEMBL ID: ENSG00000153339; HGNC ID: 29169
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
584Phosphotyrosine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014939
  • Location:chr18 27663900-27777066
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 27777290 27777571 281 364
CTCF CD4GSE12889 27791000 27791218 218 14043
CTCF CD4SISSRdata 27777290 27777571 281 364
CTCF CD4SISSRdata 27791000 27791218 218 14043
Myc K562GSE19551 27790934 27791217 283 14009
Nanog hESGSE18292 27790476 27790753 277 13548
Oct1 H2O2-HelaGSE14283 27789758 27789789 31 12707
Oct1 H2O2-HelaGSE14283 27792192 27792229 37 15144
Oct1 HelaGSE14283 27789759 27789790 31 12708
Oct1 HelaGSE14283 27792192 27792228 36 15144
Sox2 hESGSE18292 27790476 27790761 285 13552
USF1 HepG2E 27788378 27788682 304 11464
USF2 HepG2E 27776879 27777873 994 310
p130 SenescentGSE19898 27776888 27777385 497 70
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 27653648 27654014 366 10070
CTCF CD4SISSRdata 27653648 27654014 366 10070
Gata2 K562GSE18868 27655424 27656220 796 8079
Oct1 HelaGSE14283 27646160 27646191 31 17725
VDR GM10861-stimGSE22484 27648345 27649596 1251 14930
hScc1 BcellGSE12603 27653667 27653909 242 10113
hScc1 CdLSGSE12603 27653667 27654132 465 10001
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 27776098 27777834 1736 0
H3K4me3 colorectalcancer 27775456 27776493 1037 0
H3ac HepG2E 27775456 27776525 1069 0
Oct1 HelaGSE14283 27702308 27702336 28 0
Oct1 HelaGSE14283 27742557 27742590 33 0
USF1 HepG2E 27775456 27777937 2481 0
hScc1 BcellGSE12603 27776306 27777593 1287 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12049 mRNA LOC284242 chr18 27776535 27778115 499 mRNA KIAA1012 chr18 27663901 27777067Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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