Annotation Detail for RALY
Basic Information Top
| Gene Symbol: | RALY ( HNRPCL2,MGC117312,P542 ) |
|---|---|
| Gene Full Name: | RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) |
| Band: | 20q11.22 |
| Quick Links | Entrez ID:22913; OMIM: NA; Uniprot ID:RALY_HUMAN; ENSEMBL ID: ENSG00000125970; HGNC ID: 15921 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 106 | Phosphoserine. | |
| 135 | Phosphoserine. | |
| 165 | N6-acetyllysine. | |
| 262 | Phosphothreonine (By similarity). | |
| 264 | Phosphoserine (By similarity). | |
| 286 | Phosphothreonine. | |
| 288 | Phosphoserine. | |
| 295 | Phosphoserine. | |
| 298 | Phosphothreonine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 135 | Phosphoserine. | Swiss-Prot 53.0 |
| 262 | Phosphothreonine (By similarity). | Swiss-Prot 53.0 |
| 264 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 286 | Phosphothreonine. | Swiss-Prot 53.0 |
| 288 | Phosphoserine. | Swiss-Prot 53.0 |
| 295 | Phosphoserine. | Swiss-Prot 53.0 |
| 298 | Phosphothreonine. | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 9 | N-linked | HMM predict |
| 12 | N-linked | HMM predict |
| 14 | N-linked | HMM predict |
| 116 | Sulfotyrosine | HMM predict |
| 119 | Phosphotyrosine(Syk) | HMM predict |
| 124 | Phosphotyrosine(EGFR) | HMM predict |
| 135 | Phosphoserine(MAPK) | HMM predict |
| 135 | Phosphoserine(CDC2) | HMM predict |
| 135 | Phosphoserine(PKG) | HMM predict |
| 171 | O-linked | HMM predict |
| 174 | O-linked | HMM predict |
| 175 | O-linked | HMM predict |
| 177 | O-linked | HMM predict |
| 252 | O-linked | HMM predict |
| 252 | Phosphoserine(CDK) | HMM predict |
| 253 | O-linked | HMM predict |
| 261 | N-linked | HMM predict |
| 262 | Phosphothreonine(CK2) | HMM predict |
| 264 | O-linked | HMM predict |
| 295 | Phosphoserine(IKK) | HMM predict |
| 295 | Phosphoserine(CK1) | HMM predict |
| 295 | Phosphoserine(ATM) | HMM predict |
| 298 | Phosphothreonine(CK2) | HMM predict |
- RefSeq ID: NM_007367
- Location:chr20 32045392-32131725
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3ac | HepG2 | E | 32043008 | 32043446 | 438 | 2166 |
| H3ac | HepG2 | E | 32043918 | 32045042 | 1124 | 913 |
| NRSF | Jurkat | GSE13047 | 32033342 | 32033992 | 650 | 11726 |
| NRSF | mAb | Jurkat | 32031954 | 32032233 | 279 | 13299 |
| NRSF | mAb | Jurkat | 32032612 | 32033484 | 872 | 12345 |
| NRSF-mono | Jurkat | QuESTdata | 32033341 | 32033991 | 650 | 11727 |
| NRSF-poly | Jurkat | QuESTdata | 32033468 | 32033964 | 496 | 11677 |
| Rb | Growing | GSE19898 | 32044548 | 32044721 | 173 | 758 |
| TAF | Hela | GSE8489 | 32043918 | 32044678 | 760 | 1095 |
| hScc1 | Bcell | GSE12603 | 32044446 | 32046035 | 1589 | 152 |
| p130 | shRbQuiescent | GSE19898 | 32043981 | 32045143 | 1162 | 831 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 32120456 | 32121660 | 1204 | 0 |
| H3K4me3 | colorectal | cancer | 32046460 | 32047353 | 893 | 0 |
| H3ac | HepG2 | E | 32046460 | 32047528 | 1068 | 0 |
| H3ac | HepG2 | E | 32048379 | 32048559 | 180 | 0 |
| H3ac | HepG2 | E | 32048899 | 32050287 | 1388 | 0 |
| H3ac | HepG2 | E | 32050627 | 32052267 | 1640 | 0 |
| Myc | K562 | GSE19551 | 32088628 | 32088949 | 321 | 0 |
| Myc | hES | GSE17917 | 32077467 | 32077678 | 211 | 0 |
| NRSF | Jurkat | GSE13047 | 32110062 | 32111098 | 1036 | 0 |
| NRSF | mAb | Jurkat | 32109191 | 32111691 | 2500 | 0 |
| NRSF | mAb | Jurkat | 32112143 | 32112923 | 780 | 0 |
| NRSF-mono | Jurkat | QuESTdata | 32110220 | 32110973 | 753 | 0 |
| NRSF-poly | Jurkat | QuESTdata | 32110312 | 32110982 | 670 | 0 |
| Nanog | ES | GSE20650 | 32061750 | 32062497 | 747 | 0 |
| Nanog | hES | GSE18292 | 32062046 | 32062513 | 467 | 0 |
| Nanog | hES | GSE18292 | 32097265 | 32097793 | 528 | 0 |
| Nanog | hES | GSE18292 | 32119070 | 32119254 | 184 | 0 |
| Pol2 | GM12878 | GSE19551 | 32045300 | 32046250 | 950 | 0 |
| TFAP2C | MCF7 | GSE21234 | 32076374 | 32076925 | 551 | 0 |
| USF2 | HepG2 | E | 32055539 | 32056457 | 918 | 0 |
| hScc1 | Bcell | GSE12603 | 32120850 | 32121660 | 810 | 0 |
| hScc1 | Bcell | GSE12603 | 32128211 | 32128686 | 475 | 0 |
| hScc1 | Bcell | GSE12603 | 32131374 | 32131686 | 312 | 0 |
| hScc1 | CdLS | GSE12603 | 32073695 | 32074036 | 341 | 0 |
| hScc1 | CdLS | GSE12603 | 32120850 | 32121803 | 953 | 0 |
| hScc1 | G2 | GSE9613 | 32120850 | 32121767 | 917 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16289 | mRNA | RALY | chr20 | 32045392 | 32131726 | 2531 | EST | chr20 | 32066435 | 32068966 | Non-exonic Bidirectional (NOB) pairs | |