AutismKB 2.0

Annotation Detail for KDM2A


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:KDM2A ( CXXC8,DKFZp434M1735,FBL11,FBL7,FBXL11,FLJ00115,FLJ46431,JHDM1A,KIAA1004,LILINA,SF-KDM2A )
Gene Full Name: lysine (K)-specific demethylase 2A
Band: 11q13.2
Quick LinksEntrez ID:22992; OMIM: 605657; Uniprot ID:KDM2A_HUMAN; ENSEMBL ID: ENSG00000173120; HGNC ID: 13606
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
28Phosphoserine.
390Phosphoserine.
394Phosphoserine.
534Phosphothreonine.
550Phosphothreonine.
558Phosphoserine.
632Phosphothreonine.
692Phosphoserine.
713Phosphothreonine.
718Phosphoserine.
720Phosphothreonine.
721Phosphoserine.
731Phosphoserine.
739Phosphoserine.
740Phosphoserine.
832Phosphoserine.
844Phosphothreonine.
869Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_012308
  • Location:chr11 66644073-66781716
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 66638229 66638610 381 5654
Myc K562GSE19551 66637212 66637408 196 6764
PHF8 293TGSE20725 66643113 66643809 696 613
PHF8 Hs68plusFBSGSE20725 66641978 66643024 1046 1573
RARG MCF7GSE15244 66635322 66635528 206 8649
hScc1 CdLSGSE12603 66642857 66643972 1115 659
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 66785468 66785605 137 3820
RARA MCF7GSE15244 66785468 66785605 137 3820
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 66692288 66692557 269 0
CTCF CD4SISSRdata 66692288 66692557 269 0
CTCF HelaGSE12889 66776874 66777105 231 0
ER MCF7GSE19013 66772191 66773163 972 0
FOXA1 DLD1GSE12801 66654225 66654608 383 0
FOXA1 MCF7GSE15244 66660518 66661326 808 0
FOXA1 MCF7GSE15244 66763263 66763937 674 0
FOXA1 MCF7GSE15244 66764971 66765594 623 0
FOXA1 MCF7GSE15244 66772515 66773180 665 0
FOXA1 MCF7GSE15244 66774804 66775165 361 0
FOXA1 MCF7GSE15244 66776614 66777124 510 0
FoxA1 MCF7MACSdata 66726136 66726348 212 0
H3K4me3 colorectalcancer 66643866 66645546 1680 0
H3ac HepG2E 66643820 66646335 2515 0
H3ac HepG2E 66762759 66765802 3043 0
H3ac HepG2E 66766148 66767505 1357 0
Oct1 H2O2-HelaGSE14283 66669593 66669632 39 0
Oct1 HelaGSE14283 66749731 66749758 27 0
Oct1 HelaGSE14283 66763926 66763966 40 0
P300 T30-glioblastomaGSE21026 66702240 66703663 1423 0
PHF8 293TGSE20725 66763691 66764683 992 0
RARA MCF7GSE15244 66660412 66661787 1375 0
RARA MCF7GSE15244 66670863 66671282 419 0
RARA MCF7GSE15244 66763402 66764014 612 0
RARA MCF7GSE15244 66764895 66765802 907 0
RARA MCF7GSE15244 66772125 66773718 1593 0
RARA MCF7GSE15244 66776614 66777158 544 0
RARG MCF7GSE15244 66763402 66763937 535 0
RARG MCF7GSE15244 66764378 66765802 1424 0
RARG MCF7GSE15244 66772197 66773524 1327 0
TAF HelaGSE8489 66644017 66645546 1529 0
TAF HelaGSE8489 66647427 66647703 276 0
TAF HelaGSE8489 66763937 66765486 1549 0
TAF k562GSE8489 66643938 66646108 2170 0
TAFII hESGSE17917 66763662 66764695 1033 0
TFAP2C MCF7GSE21234 66772592 66773180 588 0
TFAP2C MCF7GSE21234 66777825 66778579 754 0
hScc1 CdLSGSE12603 66692191 66692764 573 0
p130 SenescentGSE19898 66763894 66764596 702 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4763 mRNA FBXL11 chr11 66644073 66781717 1248 HTC PRO1880 chr11 66719966 66721214 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved