AutismKB 2.0

Annotation Detail for LIMCH1


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Basic Information Top
Gene Symbol:LIMCH1 ( DKFZp434I0312,DKFZp686A01247,DKFZp686B2470,DKFZp686G18243,DKFZp686G2094,DKFZp781C1754,DKFZp781I1455,LIMCH1A,LMO7B,MGC72127 )
Gene Full Name: LIM and calponin homology domains 1
Band: 4p13
Quick LinksEntrez ID:22998; OMIM: NA; Uniprot ID:LIMC1_HUMAN; ENSEMBL ID: ENSG00000064042; HGNC ID: 29191
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
169Phosphoserine.
192Phosphoserine.
201Phosphoserine.
204Phosphoserine.
207Phosphoserine.
210Phosphoserine.
212Phosphoserine.
215Phosphothreonine.
217Phosphoserine.
225Phosphoserine.
231Phosphoserine.
233Phosphoserine.
274Phosphoserine.
277Phosphothreonine.
377Phosphoserine.
471Phosphoserine.
493Phosphoserine.
516Phosphoserine.
521Phosphoserine.
523Phosphoserine.
529Phosphothreonine.
601Phosphoserine.
718Phosphoserine.
875Phosphoserine.
973Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014988
  • Location:chr4 41057560-41395766
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 41055727 41057913 2186 741
ER E2-MCF7GSE14664 41045996 41046074 78 11526
P300 T30-glioblastomaGSE21026 41043206 41044196 990 13860
TAF HelaGSE8489 41056055 41057024 969 1021
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 41406611 41407448 837 11263
CTCF G2GSE9613 41405696 41406036 340 10100
ER Fulvestrant-MCF7GSE14664 41397788 41397822 34 2039
Oct1 HelaGSE14283 41397789 41397821 32 2039
P300 T0-glioblastomaGSE21026 41406503 41407148 645 11059
P300 T30-glioblastomaGSE21026 41406399 41407340 941 11103
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 41210587 41211162 575 0
CBP T30-glioblastomaGSE21026 41129325 41130122 797 0
CTCF CD4GSE12889 41358250 41358595 345 0
CTCF CD4GSE12889 41389695 41390001 306 0
CTCF CD4SISSRdata 41358250 41358595 345 0
CTCF CD4SISSRdata 41389695 41390001 306 0
CTCF G2GSE9613 41074790 41074965 175 0
CTCF G2GSE9613 41107380 41107563 183 0
CTCF G2GSE9613 41130749 41131078 329 0
CTCF G2GSE9613 41135732 41135949 217 0
CTCF G2GSE9613 41266064 41266197 133 0
CTCF G2GSE9613 41285988 41286406 418 0
CTCF G2GSE9613 41308877 41309157 280 0
CTCF G2GSE9613 41315989 41316272 283 0
CTCF G2GSE9613 41340979 41341379 400 0
CTCF G2GSE9613 41353580 41353907 327 0
CTCF G2GSE9613 41357714 41358592 878 0
CTCF G2GSE9613 41378138 41378267 129 0
CTCF G2GSE9613 41389306 41390159 853 0
CTCF G2GSE9613 41390469 41390768 299 0
ER E2-MCF7GSE14664 41146252 41146293 41 0
ER E2-MCF7GSE14664 41150045 41150083 38 0
ER E2-MCF7GSE14664 41159704 41159737 33 0
ER E2-MCF7GSE14664 41292598 41292669 71 0
ER E2-MCF7GSE14664 41310849 41310937 88 0
ER E2-MCF7GSE14664 41324643 41324675 32 0
ER E2-MCF7GSE14664 41325254 41325303 49 0
ER E2-MCF7GSE14664 41327524 41327559 35 0
ER E2-MCF7GSE14664 41384153 41384197 44 0
ER E2-MCF7GSE14664 41384446 41384520 74 0
ER Fulvestrant-MCF7GSE14664 41292618 41292675 57 0
ER Fulvestrant-MCF7GSE14664 41325256 41325312 56 0
FoxA1 MCF7MACSdata 41139640 41139850 210 0
H3K4me3 colorectalcancer 41058502 41058923 421 0
KLF4 hESGSE17917 41341191 41341611 420 0
Myc K562GSE19551 41341038 41341332 294 0
Myc K562GSE19551 41358226 41358569 343 0
Myc hESGSE17917 41223241 41223542 301 0
Nanog ESGSE20650 41200977 41201398 421 0
Nanog hESGSE18292 41129609 41130231 622 0
Nanog hESGSE18292 41200917 41201484 567 0
Nanog hESGSE18292 41317589 41318163 574 0
Oct1 H2O2-HelaGSE14283 41095486 41095513 27 0
Oct1 H2O2-HelaGSE14283 41160436 41160467 31 0
Oct1 HelaGSE14283 41076818 41076846 28 0
Oct1 HelaGSE14283 41095453 41095513 60 0
Oct1 HelaGSE14283 41146251 41146284 33 0
Oct1 HelaGSE14283 41150044 41150087 43 0
Oct1 HelaGSE14283 41160437 41160465 28 0
Oct1 HelaGSE14283 41202330 41202377 47 0
Oct1 HelaGSE14283 41222173 41222203 30 0
Oct1 HelaGSE14283 41224688 41224749 61 0
Oct1 HelaGSE14283 41226932 41226962 30 0
Oct1 HelaGSE14283 41230314 41230351 37 0
Oct1 HelaGSE14283 41257632 41257667 35 0
Oct1 HelaGSE14283 41289406 41289441 35 0
Oct1 HelaGSE14283 41292624 41292670 46 0
Oct1 HelaGSE14283 41320331 41320405 74 0
Oct4 hESGSE21916 41129563 41130136 573 0
P300 T30-glioblastomaGSE21026 41129348 41130308 960 0
P300 T30-glioblastomaGSE21026 41221843 41222351 508 0
P300 T30-glioblastomaGSE21026 41239485 41239989 504 0
PAX3-FKHR Rh4GSE19063 41296561 41298320 1759 0
PHF8 HeLaGSE20725 41056927 41058513 1586 0
RARA MCF7GSE15244 41142093 41142939 846 0
RNAII Tamoxifen-MCF7GSE14664 41136763 41136864 101 0
RNAII Tamoxifen-MCF7GSE14664 41292634 41292672 38 0
Rb GrowingGSE19898 41341081 41341253 172 0
STAT1 HeLaGSE12783 41075623 41076509 886 0
STAT1 IFNSISSRdata 41075711 41076512 801 0
Sox2 hESGSE18292 41129626 41130101 475 0
hScc1 BcellGSE12603 41340979 41341196 217 0
hScc1 BcellGSE12603 41358178 41358762 584 0
hScc1 BcellGSE12603 41389589 41390119 530 0
hScc1 CdLSGSE12603 41357975 41358762 787 0
hScc1 CdLSGSE12603 41389380 41390691 1311 0
hScc1 G2GSE9613 41357714 41358731 1017 0
hScc1 G2GSE9613 41389553 41390883 1330 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
19604 HTC KIAA1102 chr4 41455846 41542988 268 EST chr4 41542720 41543334Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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