AutismKB 2.0

Annotation Detail for CNOT1


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Basic Information Top
Gene Symbol:CNOT1 ( CDC39,DKFZp686E0722,DKFZp686O168,FLJ36492,FLJ90644,KIAA1007,NOT1,NOT1H )
Gene Full Name: CCR4-NOT transcription complex, subunit 1
Band: 16q21
Quick LinksEntrez ID:23019; OMIM: 604917; Uniprot ID:CNOT1_HUMAN; ENSEMBL ID: ENSG00000125107; HGNC ID: 7877
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1933Phosphotyrosine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_206999
  • Location:chr16 57134741-57221250
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 57220805 57222528 1723 416
Fos K562GSE19551 57220893 57222199 1306 296
Myc K562GSE19551 57229662 57229922 260 8542
Oct1 H2O2-HelaGSE14283 57229028 57229066 38 7797
Oct1 HelaGSE14283 57229025 57229068 43 7796
PHF8 HeLaGSE20725 57220478 57222100 1622 39
RARA MCF7GSE15244 57236275 57236685 410 15230
TFAP2C MCF7GSE21234 57236165 57236825 660 15245
p130 QuiescentGSE19898 57221198 57222158 960 428
p130 SenescentGSE19898 57220827 57222153 1326 240
p130 shRbQuiescentGSE19898 57220771 57222259 1488 265
p130 shRbSenescentGSE19898 57220786 57222156 1370 221
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 57220609 57221182 573 0
ER Fulvestrant-MCF7GSE14664 57204285 57204373 88 0
H3K4me3 colorectalcancer 57219547 57220516 969 0
H3ac HepG2E 57218832 57219219 387 0
H3ac HepG2E 57219547 57222293 2746 0
KLF4 hESGSE17917 57213647 57213804 157 0
LIN9 G0GSE7516 57220680 57221551 871 0
Oct1 H2O2-HelaGSE14283 57163245 57163364 119 0
Oct1 H2O2-HelaGSE14283 57184307 57184337 30 0
Oct1 HelaGSE14283 57152723 57152753 30 0
Oct1 HelaGSE14283 57163234 57163372 138 0
Oct1 HelaGSE14283 57184306 57184376 70 0
Oct1 HelaGSE14283 57200430 57200462 32 0
Oct4 hESGSE17917 57177565 57177910 345 0
Oct4 hESGSE17917 57213654 57213804 150 0
P300 T30-glioblastomaGSE21026 57154486 57155209 723 0
RUNX JurkatGSE17954 57210023 57210094 71 0
TAF HelaGSE8489 57198306 57198725 419 0
hScc1 BcellGSE12603 57220380 57220715 335 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10070 EST chr16 57111448 57111932 484 mRNA CNOT1 chr16 57111356 57221251Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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