AutismKB 2.0

Annotation Detail for KDM4B


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Basic Information Top
Gene Symbol:KDM4B ( FLJ44906,JMJD2B,KIAA0876 )
Gene Full Name: lysine (K)-specific demethylase 4B
Band: 19p13.3
Quick LinksEntrez ID:23030; OMIM: 609765; Uniprot ID:KDM4B_HUMAN; ENSEMBL ID: ENSG00000127663; HGNC ID: 29136
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
305Phosphothreonine (By similarity).
566Phosphoserine.
602N6-acetyllysine.
622Phosphoserine.
1065Phosphothreonine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_015015
  • Location:chr19 4920131-5104605
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
HIF1 HypoHepG2 4919392 4920079 687 396
PHF8 Hs68plusFBSGSE20725 4919706 4920548 842 5
USF1 HepG2E 4919392 4919578 186 647
hScc1 BcellGSE12603 4919646 4920269 623 174
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 5123643 5125035 1392 19734
CTCF CD4GSE12889 5121470 5121788 318 17024
CTCF CD4SISSRdata 5121470 5121788 318 17024
CTCF JurkatGSE12889 5105226 5105459 233 737
CTCF G2GSE9613 5105277 5105618 341 842
CTCF G2GSE9613 5121320 5121742 422 16926
Fos K562GSE19551 5116444 5117078 634 12156
Fos K562GSE19551 5124059 5124574 515 19711
Oct1 H2O2-HelaGSE14283 5124177 5124226 49 19596
Oct1 HelaGSE14283 5124176 5124223 47 19594
P300 T30-glioblastomaGSE21026 5117255 5117656 401 12850
P300 T30-glioblastomaGSE21026 5123790 5124887 1097 19733
RARA MCF7GSE15244 5124150 5124470 320 19705
STAT1 HeLaGSE12783 5121190 5123309 2119 17644
TFAP2C MCF7GSE21234 5124049 5124602 553 19720
hScc1 BcellGSE12603 5121175 5121742 567 16853
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 5026156 5027708 1552 0
CBP T0-glioblastomaGSE21026 5090031 5090484 453 0
CBP T30-glioblastomaGSE21026 5090064 5090901 837 0
CTCF CD4GSE12889 4952547 4952810 263 0
CTCF CD4GSE12889 4982707 4982970 263 0
CTCF CD4GSE12889 4999307 4999556 249 0
CTCF CD4SISSRdata 4952547 4952810 263 0
CTCF CD4SISSRdata 4982707 4982970 263 0
CTCF CD4SISSRdata 4999307 4999556 249 0
CTCF HelaGSE12889 4952628 4952874 246 0
CTCF HelaGSE12889 4990030 4990192 162 0
CTCF JurkatGSE12889 4989914 4990288 374 0
CTCF JurkatGSE12889 4999203 4999547 344 0
CTCF G2GSE9613 4931858 4932108 250 0
CTCF G2GSE9613 4936599 4936847 248 0
CTCF G2GSE9613 4970767 4971113 346 0
CTCF G2GSE9613 4982622 4983259 637 0
CTCF G2GSE9613 4984246 4984765 519 0
CTCF G2GSE9613 4999753 5000028 275 0
CTCF G2GSE9613 5041837 5042138 301 0
CTCF G2GSE9613 5058453 5058668 215 0
CTCF G2GSE9613 5067918 5068237 319 0
ER E2-MCF7GSE14664 4984562 4984603 41 0
ER MCF7GSE19013 4921590 4922457 867 0
ER MCF7GSE19013 4922534 4923117 583 0
ER MCF7GSE19013 4942413 4943446 1033 0
ER MCF7GSE19013 4971701 4972566 865 0
FOXA1 MCF7GSE15244 4997382 4997986 604 0
Fos K562GSE19551 5008936 5009334 398 0
FoxA1 MCF7MACSdata 4997575 4997765 190 0
Gata1 K562GSE18868 5041956 5042519 563 0
H3K4me3 colorectalcancer 4920117 4920269 152 0
HIF1 HypoHepG2 4994113 4995406 1293 0
Myc K562GSE19551 4999215 4999605 390 0
NRSF JurkatGSE13047 5032298 5032998 700 0
NRSF mAbJurkat 5032177 5032693 516 0
NRSF-mono JurkatQuESTdata 5032250 5032991 741 0
Oct1 H2O2-HelaGSE14283 4925173 4925205 32 0
Oct1 H2O2-HelaGSE14283 4939284 4939311 27 0
Oct1 H2O2-HelaGSE14283 4941257 4941293 36 0
Oct1 HelaGSE14283 4925173 4925206 33 0
Oct1 HelaGSE14283 4939277 4939314 37 0
Oct1 HelaGSE14283 4941257 4941291 34 0
Oct1 HelaGSE14283 4945238 4945267 29 0
Oct1 HelaGSE14283 5057678 5057716 38 0
P300 T30-glioblastomaGSE21026 4927051 4928220 1169 0
P300 T30-glioblastomaGSE21026 5089871 5090887 1016 0
PHF8 293TGSE20725 4919973 4920531 558 0
PHF8 HeLaGSE20725 4919788 4920845 1057 0
PHF8 Hs68minusFBSGSE20725 4919796 4920659 863 0
Rb GrowingGSE19898 4937390 4937528 138 0
Rb GrowingGSE19898 4997403 4997610 207 0
Rb GrowingGSE19898 4999349 4999608 259 0
Rb QuiescentGSE19898 4929008 4929181 173 0
Rb SenescentGSE19898 4982664 4982853 189 0
TAF k562GSE8489 4994113 4995406 1293 0
TFAP2C MCF7GSE21234 4922320 4922858 538 0
TFAP2C MCF7GSE21234 4935580 4935964 384 0
TFAP2C MCF7GSE21234 4999257 4999773 516 0
TFAP2C MCF7GSE21234 5073921 5074316 395 0
TFAP2C MCF7GSE21234 5092609 5094209 1600 0
c MYCMCF7 4970767 4971113 346 0
hScc1 BcellGSE12603 4925825 4926121 296 0
hScc1 BcellGSE12603 4931893 4932606 713 0
hScc1 BcellGSE12603 4934202 4934348 146 0
hScc1 BcellGSE12603 4966046 4966221 175 0
hScc1 BcellGSE12603 4982588 4982924 336 0
hScc1 BcellGSE12603 4991551 4991882 331 0
hScc1 BcellGSE12603 4992353 4992747 394 0
hScc1 BcellGSE12603 4999235 4999826 591 0
hScc1 BcellGSE12603 5001967 5002480 513 0
hScc1 BcellGSE12603 5004837 5005071 234 0
hScc1 BcellGSE12603 5010867 5011141 274 0
hScc1 BcellGSE12603 5016802 5017089 287 0
hScc1 BcellGSE12603 5021782 5022214 432 0
hScc1 BcellGSE12603 5065110 5065622 512 0
hScc1 BcellGSE12603 5069243 5069532 289 0
hScc1 BcellGSE12603 5070384 5070655 271 0
hScc1 BcellGSE12603 5073689 5074046 357 0
hScc1 BcellGSE12603 5082023 5082762 739 0
hScc1 BcellGSE12603 5094919 5095115 196 0
hScc1 BcellGSE12603 5096979 5097352 373 0
hScc1 BcellGSE12603 5099983 5100157 174 0
hScc1 BcellGSE12603 5101452 5101958 506 0
hScc1 CdLSGSE12603 4982588 4983153 565 0
p130 QuiescentGSE19898 4929023 4929208 185 0
p130 QuiescentGSE19898 5008831 5009014 183 0
p130 SenescentGSE19898 4939804 4940053 249 0
p130 shRbSenescentGSE19898 4929678 4929999 321 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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